Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0352
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31490.1 68417.m04473 coatomer beta subunit, putative / beta-...    29   3.5  
At4g31480.1 68417.m04472 coatomer beta subunit, putative / beta-...    29   3.5  
At5g16400.1 68418.m01917 thioredoxin, putative similar to SP|P29...    28   6.2  
At3g05685.1 68416.m00635 expressed protein                             28   6.2  
At3g20040.1 68416.m02535 hexokinase, putative similar to hexokin...    27   8.2  

>At4g31490.1 68417.m04473 coatomer beta subunit, putative /
           beta-coat protein, putative / beta-COP, putative similar
           to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
           from {Rattus norvegicus} SP|P23514, {Mus musculus}
           SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 948

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 110 NEVVRVLFKDFVPDRVCSAEVGRCLEKLLPELLRACGDPAPRVHSTAQHTVL 265
           NEVV++L K+ V  +    E      ++L + + AC    P V ST  H ++
Sbjct: 350 NEVVQMLKKEVVKTQSGELEKNGEYRQMLIQAIHACAVKFPEVASTVVHLLM 401


>At4g31480.1 68417.m04472 coatomer beta subunit, putative /
           beta-coat protein, putative / beta-COP, putative similar
           to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
           from {Rattus norvegicus} SP|P23514, {Mus musculus}
           SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 971

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 110 NEVVRVLFKDFVPDRVCSAEVGRCLEKLLPELLRACGDPAPRVHSTAQHTVL 265
           NEVV++L K+ V  +    E      ++L + + AC    P V ST  H ++
Sbjct: 373 NEVVQMLKKEVVKTQSGELEKNGEYRQMLIQAIHACAVKFPEVASTVVHLLM 424


>At5g16400.1 68418.m01917 thioredoxin, putative similar to SP|P29450
           Thioredoxin F-type, chloroplast precursor (TRX-F) {Pisum
           sativum}; contains Pfam profile: PF00085 Thioredoxin
          Length = 185

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -3

Query: 408 DSGLALPLAFLTSMNHGNHLQSGRAVCSSAYTAKQKTINLTCGQSATV 265
           +SG+A  + F +    G  L SGR + S       +T+N+T GQ   V
Sbjct: 38  NSGVATKIGFCSG--GGGVLDSGRRIGSCVVRCSLETVNVTVGQVTEV 83


>At3g05685.1 68416.m00635 expressed protein
          Length = 180

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -2

Query: 175 PHLRRTHPVRYEILEQNSDNFIGLTVHGKDFISQSSLQQDGGRPRGFVRR 26
           P+    HP  +++ E + D+F GL  +  ++ ++ S  +D  + R F R+
Sbjct: 23  PNEELKHPTWFKVPEWDVDSFEGLEYNSSEYKNEFSNDEDENQWRRFKRQ 72


>At3g20040.1 68416.m02535 hexokinase, putative similar to hexokinase
           1 [Spinacia oleracea] Swiss-Prot:Q9SEK3
          Length = 488

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 303 FVLPYRQTSIRPYLIVSGYRGSWRSEMPGAEPSRCL 410
           F  P +QTSI   +++   +G   SEM G + + CL
Sbjct: 176 FSFPVKQTSISSGVLIKWTKGFAISEMAGEDIAECL 211


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,607,259
Number of Sequences: 28952
Number of extensions: 238236
Number of successful extensions: 592
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)