Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0350
(550 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 144 4e-35
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 128 2e-30
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 113 1e-25
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 8e-21
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 52 4e-07
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 37 0.009
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.012
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.017
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 36 0.022
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.067
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 34 0.067
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 34 0.067
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 34 0.088
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 1.4
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 28 5.8
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 144 bits (349), Expect = 4e-35
Identities = 62/128 (48%), Positives = 92/128 (71%)
Frame = +3
Query: 105 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVT 284
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER++G T+++ F+T + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225
Query: 285 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 464
++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQTREHA+LA T GVK L
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHL 285
Query: 465 IVGVNKMD 488
++ VNKMD
Sbjct: 286 VILVNKMD 293
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 128 bits (310), Expect = 2e-30
Identities = 58/60 (96%), Positives = 59/60 (98%)
Frame = +3
Query: 165 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 344
MGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 113 bits (271), Expect = 1e-25
Identities = 50/84 (59%), Positives = 65/84 (77%)
Frame = +3
Query: 237 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 416
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 417 TREHALLAFTLGVKQLIVGVNKMD 488
TREHA+L +LGV QLIV +NK+D
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLD 84
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 8e-21
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +3
Query: 21 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 167
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 51.6 bits (118), Expect = 4e-07
Identities = 29/110 (26%), Positives = 52/110 (47%)
Frame = +3
Query: 54 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGI 233
+I H D+GK+T T L+ G I +EA + K D ++ ER+RGI
Sbjct: 15 IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65
Query: 234 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 383
++ ++ F + I+D PGH+DF ++ + D ++++ G
Sbjct: 66 SVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 37.1 bits (82), Expect = 0.009
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 3/124 (2%)
Frame = +3
Query: 21 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKFEKEAQEMGKGSFKYAW 194
M K+ N+ VI HVD GKST T L+ K G I K +F ++
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDRCITIKS 71
Query: 195 VLDKLKAERERGITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 371
L E I K + + + +ID+PGH DF + D A+++V
Sbjct: 72 TAISLYYELPESDFEYITQPKDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVD 131
Query: 372 AGTG 383
+G
Sbjct: 132 CVSG 135
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 36.7 bits (81), Expect = 0.012
Identities = 35/122 (28%), Positives = 50/122 (40%), Gaps = 6/122 (4%)
Frame = +3
Query: 36 THINIVVIGHVDSGKSTTTGHLIYK--CGGIDKRTIEKFE--KEAQEMGKGSFKYAWVLD 203
T I + V+G+V+SGKST G L Y G + + F E Q S + +
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTYDELDNGQGRARLNLFRHLHEIQSGRTSSISHEILGF 170
Query: 204 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS--QADCAVLIVAAG 377
E A E S +T ID GH ++K I G + D A+L++A
Sbjct: 171 SCTGEVVNYSDGRSAEDVCEQSSKLITFIDLAGHHKYMKTTIFGLTGHSPDYAMLVIAGN 230
Query: 378 TG 383
G
Sbjct: 231 AG 232
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 36.3 bits (80), Expect = 0.017
Identities = 25/65 (38%), Positives = 31/65 (47%)
Frame = +3
Query: 45 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 224
N ++ HVD GKST L+ G I K + K VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986
Query: 225 RGITI 239
RGIT+
Sbjct: 1987 RGITV 1991
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 35.9 bits (79), Expect = 0.022
Identities = 26/95 (27%), Positives = 41/95 (43%)
Frame = +3
Query: 204 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 383
+ K E ER ITI + Y +D PGH + M+ G + D A+L++A
Sbjct: 49 RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIAGNES 100
Query: 384 EFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 488
QT EH + +K +++ NK+D
Sbjct: 101 ------CPQPQTSEHLAAIEIMKLKHILILQNKID 129
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 34.3 bits (75), Expect = 0.067
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = +3
Query: 279 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 458
+T ID PGH F G + D VL+VAA G ++ ++ HA+ A
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129
Query: 459 QLIVGVNKMD 488
LIV +NK+D
Sbjct: 130 PLIVAINKID 139
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 34.3 bits (75), Expect = 0.067
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 2/137 (1%)
Frame = +3
Query: 18 KMGKEKTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYA 191
K+ + + NI V+GHVDSGK++ L DK + ++G SF+ A
Sbjct: 28 KIKERILNFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA 87
Query: 192 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 371
+ + L R G D+ +T++D PGH IK +I G A +I
Sbjct: 88 -LPEHL---RSAGSEHDLL---------QMTLVDCPGHASLIKTIIGG------AQIIGE 128
Query: 372 AGTGEFEAGISKNGQTR 422
GT E G ++G+ +
Sbjct: 129 CGT--IEGGFGQSGKVK 143
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 34.3 bits (75), Expect = 0.067
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Frame = +3
Query: 42 INIVVIGHVDSGKST-----TTGHLIYKCGGIDKRTI-EKFEKEA---QEMGKGSFKYAW 194
+ + V+G+VD+GKST T G L G +R K E E+ +G +
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTHGELDNGRGTARQRLFRHKHEMESGRTSSVGNDILGFDN 289
Query: 195 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITG 335
+ + G +D A E+SK +T ID GH ++K I G
Sbjct: 290 TGQVVNKAEQHGANVDWAKICKESSK-VITFIDLAGHERYLKTTIFG 335
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 33.9 bits (74), Expect = 0.088
Identities = 24/87 (27%), Positives = 35/87 (40%)
Frame = +3
Query: 228 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 407
GIT I + + + +D PGH F G D +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP----- 177
Query: 408 NGQTREHALLAFTLGVKQLIVGVNKMD 488
QT+E A GV +I +NK+D
Sbjct: 178 --QTKEAISHAQAAGV-PIIFAINKID 201
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 285 IIDAPGHRDFIKNMITGTSQADCAVLIV 368
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -3
Query: 230 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQMTS 90
TT+T S YPS+ + +F D T N TT V +T+
Sbjct: 236 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSITA 282
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -3
Query: 239 DCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQMTS 90
D TT+T S YPS+ + +F D T N TT V +++
Sbjct: 344 DFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 393
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,270,243
Number of Sequences: 59808
Number of extensions: 307003
Number of successful extensions: 750
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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