Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0350
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   328   2e-92
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   324   3e-91
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   210   9e-57
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   177   8e-47
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    35   6e-04
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   0.88 
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.0  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.7  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   8.2  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   8.2  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   8.2  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  328 bits (806), Expect = 2e-92
 Identities = 159/174 (91%), Positives = 159/174 (91%)
 Frame = +3

Query: 21  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 200
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 201 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 380
           DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT
Sbjct: 61  DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 120

Query: 381 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDXTXXXXXXXXXXXXKXEV 542
           GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD T            K EV
Sbjct: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEV 174


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  324 bits (797), Expect = 3e-91
 Identities = 157/174 (90%), Positives = 158/174 (90%)
 Frame = +3

Query: 21  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 200
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 201 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 380
           DKLKAERERGITIDIALWKFET+KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 
Sbjct: 61  DKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGI 120

Query: 381 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDXTXXXXXXXXXXXXKXEV 542
           GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD T            K EV
Sbjct: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDMTDPPYSEARFEEIKKEV 174


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  210 bits (512), Expect = 9e-57
 Identities = 103/117 (88%), Positives = 103/117 (88%)
 Frame = +3

Query: 192 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 371
           WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 60

Query: 372 AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDXTXXXXXXXXXXXXKXEV 542
           AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD T            K EV
Sbjct: 61  AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEV 117


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  177 bits (430), Expect = 8e-47
 Identities = 87/101 (86%), Positives = 87/101 (86%)
 Frame = +3

Query: 240 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 419
           DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 60

Query: 420 REHALLAFTLGVKQLIVGVNKMDXTXXXXXXXXXXXXKXEV 542
           REHALLAFTLGVKQLIVGVNKMD T            K EV
Sbjct: 61  REHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEV 101


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 34.7 bits (76), Expect = 6e-04
 Identities = 26/70 (37%), Positives = 33/70 (47%)
 Frame = +3

Query: 279 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 458
           VT +D PGH  FI     G    D  VL+VAA  G  E       QT +   +A    V 
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDGVKE-------QTLQSIEMAKDAKV- 246

Query: 459 QLIVGVNKMD 488
            +IV +NK+D
Sbjct: 247 PIIVAINKID 256



 Score = 25.4 bits (53), Expect = 0.38
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 33  KTHINIVVIGHVDSGKST 86
           K H  + ++GHVD GK+T
Sbjct: 143 KRHPIVTIMGHVDHGKTT 160


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
          methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +3

Query: 42 INIVVIGHVDSGKST 86
          INI  IGHV  GKST
Sbjct: 43 INIGTIGHVAHGKST 57


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 264 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 365
           T KYY    D P +  FIKN+   ++ +D   LI
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLI 327


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 264 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 365
           T KYY    D P +  FIKN+   ++ +D   L+
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLV 327


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 123 DKRTIEKFEKEAQEMG 170
           DK+   KFE+EA+++G
Sbjct: 112 DKKYRVKFEEEAKKLG 127


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 123 DKRTIEKFEKEAQEMG 170
           DK+   KFE+EA+++G
Sbjct: 112 DKKFRVKFEEEAKKLG 127


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 123 DKRTIEKFEKEAQEMG 170
           DK+   KFE+EA+++G
Sbjct: 112 DKKYRVKFEEEAKKLG 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,470
Number of Sequences: 438
Number of extensions: 2553
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)