Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0348
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    37   0.003
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    31   0.18 
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    27   3.8  
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    26   6.6  
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   6.6  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   8.7  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   8.7  

>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 675 LLMELLDWFKHDFFKWVDXPDCDLC 749
           ++  LL WFK +FF WV+ P C+ C
Sbjct: 84  VIQALLKWFKREFFVWVNQPPCEKC 108


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 19/91 (20%), Positives = 42/91 (46%)
 Frame = +2

Query: 419 NSTDVREQPKASPVHSLQTKNRFLLKIQDLFNGMQVYEDEDLLAHARDQIPLVTLXLMAL 598
           N+T + E P A+  H+L + N+    +    + +Q    +  +    D+ P+ T   ++ 
Sbjct: 193 NATSIIEHPDAANAHTLASLNQPPKHLTVSPSSIQRLSPQPYVRPTSDERPIETDSSVSA 252

Query: 599 DRVREQQKKIXIGEIXSKRSTI*YSFANGAP 691
            +V    +++  G+  S   T+ +   NG+P
Sbjct: 253 PKVANHDEELKQGKSTSPSDTVLHPDLNGSP 283


>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +3

Query: 372 NYIFAVDPCLLXRSX*ILQTLENNLKHPQFIRCKLKTDSYSKFKIYSMVCKFMRMKIY 545
           NY+F+     L     ++  ++  +K   +    L  D +SK  IY+ VC+F R+ I+
Sbjct: 4   NYVFSNSFSFLY----LMVNVQCRIKEIMYWNICLYWDVFSKLIIYNKVCQFGRIHIF 57


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 149 ESYNEFILCXRILCSTRRRN 90
           E YNEF LC   +C  +R N
Sbjct: 432 EDYNEFGLCKSFICLFKRLN 451


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 450 HPQFIRCKLKTDSYSKFKIYSMVCKFMRMK 539
           HP FIRCK+      K        KF+R++
Sbjct: 162 HPDFIRCKIIDSHLEKIAKVHWETKFIRIE 191


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 134  IHYSSLRNSWKRITXYCW*NPHDYE 208
            + Y+S  N+W+      W NP DY+
Sbjct: 1120 LEYASTPNNWEVWAPRVWSNPPDYD 1144


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 6/28 (21%), Positives = 16/28 (57%)
 Frame = +3

Query: 234  SKIYRNWTLLMNT*SISDSNRWTTNLHI 317
            +++Y NW  ++ T  +  + +W   +H+
Sbjct: 1087 ARVYHNWLEILETRGVKKTVQWCEEMHL 1114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,069
Number of Sequences: 5004
Number of extensions: 53564
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)