Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0348
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32) 36 0.027
SB_35998| Best HMM Match : SURF6 (HMM E-Value=4.8) 29 5.3
SB_11502| Best HMM Match : PA (HMM E-Value=9.3) 29 5.3
SB_27819| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_58256| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_50872| Best HMM Match : AraC_E_bind (HMM E-Value=7.5) 28 9.3
SB_40188| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_16959| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_15450| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_12578| Best HMM Match : DUF488 (HMM E-Value=9.4) 28 9.3
SB_10577| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_6945| Best HMM Match : FeThRed_A (HMM E-Value=9.1) 28 9.3
SB_56339| Best HMM Match : L51_S25_CI-B8 (HMM E-Value=8.8) 28 9.3
>SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)
Length = 456
Score = 36.3 bits (80), Expect = 0.027
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 675 LLMELLDWFKHDFFKWVDXPDCDLC 749
L++ LL+WFK FF+W+D P+C C
Sbjct: 267 LILVLLEWFK-GFFQWMDKPECKSC 290
>SB_35998| Best HMM Match : SURF6 (HMM E-Value=4.8)
Length = 279
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +2
Query: 221 KKNVFKDLSKLDSFNEYMKYIGFKSVDNE--FTYPKEXXXSKLRMAQVAIERK 373
K+N++ D SK+DS E + K+VD++ F E LR + +A++ K
Sbjct: 189 KRNIWLDDSKVDSIKENTEANVKKTVDDDMIFILKSEKPFGALRDSMIALKEK 241
>SB_11502| Best HMM Match : PA (HMM E-Value=9.3)
Length = 511
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 291 LNPIYFMYSLKESSFDKSLKTFFLI 217
LNP +F+Y K SS D S T+ ++
Sbjct: 149 LNPSFFVYPFKTSSSDTSFSTYIIM 173
>SB_27819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 383
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 191 NPHDYELRSIKKNVFKDLSKLDSFNEYMKY 280
N H Y LRS N +K +S F +++ Y
Sbjct: 351 NEHGYSLRSGSMNTYKHISVTKRFGDFLTY 380
>SB_58256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 191 NPHDYELRSIKKNVFKDLSKLDSFNEYMKY 280
N H Y LRS N +K +S F +++ Y
Sbjct: 68 NEHGYSLRSGSMNTYKHISVTKRFGDFVTY 97
>SB_50872| Best HMM Match : AraC_E_bind (HMM E-Value=7.5)
Length = 206
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 191 NPHDYELRSIKKNVFKDLSKLDSFNEYMKY 280
N H Y LRS N +K +S F +++ Y
Sbjct: 174 NEHGYSLRSGSMNTYKHISLTKRFGDFVTY 203
>SB_40188| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 191 NPHDYELRSIKKNVFKDLSKLDSFNEYMKY 280
N H Y LRS N +K +S F +++ Y
Sbjct: 200 NVHGYSLRSGSMNTYKHISATKRFGDFVTY 229
>SB_16959| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 191 NPHDYELRSIKKNVFKDLSKLDSFNEYMKY 280
N H Y LRS N +K +S F +++ Y
Sbjct: 68 NEHGYSLRSGSMNTYKHISVTKRFGDFVTY 97
>SB_15450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 191 NPHDYELRSIKKNVFKDLSKLDSFNEYMKY 280
N H Y LRS N +K +S F +++ Y
Sbjct: 174 NVHGYSLRSGSMNTYKHISATKRFGDFVTY 203
>SB_12578| Best HMM Match : DUF488 (HMM E-Value=9.4)
Length = 249
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 191 NPHDYELRSIKKNVFKDLSKLDSFNEYMKY 280
N H Y LRS N +K +S F +++ Y
Sbjct: 217 NEHGYSLRSGSMNTYKHISVTKRFGDFVTY 246
>SB_10577| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 191 NPHDYELRSIKKNVFKDLSKLDSFNEYMKY 280
N H Y LRS N +K +S F +++ Y
Sbjct: 146 NVHGYSLRSGSMNTYKHISATKRFGDFVAY 175
>SB_6945| Best HMM Match : FeThRed_A (HMM E-Value=9.1)
Length = 207
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 191 NPHDYELRSIKKNVFKDLSKLDSFNEYMKY 280
N H Y LRS N +K +S F +++ Y
Sbjct: 175 NEHGYSLRSGSMNTYKHISVTKRFGDFVAY 204
>SB_56339| Best HMM Match : L51_S25_CI-B8 (HMM E-Value=8.8)
Length = 132
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 191 NPHDYELRSIKKNVFKDLSKLDSFNEYMKY 280
N H Y LRS N +K +S F +++ Y
Sbjct: 100 NEHGYSLRSGSMNTYKHISVTKRFGDFVTY 129
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,324,244
Number of Sequences: 59808
Number of extensions: 370169
Number of successful extensions: 557
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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