Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0348
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81552-7|CAB04487.2|  606|Caenorhabditis elegans Hypothetical pr...    39   0.004
AL117201-5|CAB57916.1|  606|Caenorhabditis elegans Hypothetical ...    39   0.004
AF250925-1|AAF74721.1|  542|Caenorhabditis elegans PNGase protein.     39   0.004
Z82265-5|CAB05175.1|  334|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z72511-6|CAA96659.2|  391|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AF101316-1|AAC69231.1|  684|Caenorhabditis elegans Hypothetical ...    28   8.1  

>Z81552-7|CAB04487.2|  606|Caenorhabditis elegans Hypothetical
           protein F56G4.5 protein.
          Length = 606

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 666 DTALLMELLDWFKHDFFKWVDXPDCDLC 749
           + A+L +LL WFK  FF W D P C  C
Sbjct: 167 EKAILKDLLHWFKTQFFTWFDRPTCPKC 194


>AL117201-5|CAB57916.1|  606|Caenorhabditis elegans Hypothetical
           protein F56G4.5 protein.
          Length = 606

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 666 DTALLMELLDWFKHDFFKWVDXPDCDLC 749
           + A+L +LL WFK  FF W D P C  C
Sbjct: 167 EKAILKDLLHWFKTQFFTWFDRPTCPKC 194


>AF250925-1|AAF74721.1|  542|Caenorhabditis elegans PNGase protein.
          Length = 542

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 666 DTALLMELLDWFKHDFFKWVDXPDCDLC 749
           + A+L +LL WFK  FF W D P C  C
Sbjct: 103 EKAILKDLLHWFKTQFFTWFDRPTCPKC 130


>Z82265-5|CAB05175.1|  334|Caenorhabditis elegans Hypothetical
           protein F02H6.7 protein.
          Length = 334

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -1

Query: 708 HA*TSPGAPLAKLYQMVDRLLXISPIXIFFCCSLTLSKAIXCXV--TKGIWSRACAN 544
           H   S G+P+     +   +  +  + +FF   L +S A  C +  T GIWS   +N
Sbjct: 18  HQLDSNGSPIYDALSVKIHIFQMLKLHVFFLVLLQISNAADCPICPTGGIWSEWTSN 74


>Z72511-6|CAA96659.2|  391|Caenorhabditis elegans Hypothetical
           protein F55A11.5 protein.
          Length = 391

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 266 EYMKYIGFKSVDNEFTYPKEXXXSKLRMA-QVAIERKLHFCCGSVPIXPIPXNSTD 430
           EY++YI     D    YP     S++ +  + A  R++HF    +PI  +P N  D
Sbjct: 219 EYVEYI----YDITIAYPYNIVQSEIDLVLKGASPREVHFHIRKIPISQVPLNEQD 270


>AF101316-1|AAC69231.1|  684|Caenorhabditis elegans Hypothetical
           protein F52F10.3 protein.
          Length = 684

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 24/91 (26%), Positives = 36/91 (39%)
 Frame = -3

Query: 568 YLVSGMC**IFILINLHTIE*ILNFE*ESVFSLQRMNWGCFRLFSNVCRIXWDRXNRHGS 389
           ++V+G C  IF   +    E    F   + F+  R+ WG F     VC +        G 
Sbjct: 509 FVVAGFC--IFSTYDYDKGEQWSTFSRATFFNFHRLGWGVF-----VCWVVGANHMGWGG 561

Query: 388 TAKM*FPFDGHLSHP*FAXXXLLWICKFVVH 296
                 P D  +SHP +     L  C ++VH
Sbjct: 562 ------PIDTFMSHPIWQPFGRLSYCAYIVH 586


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,334,053
Number of Sequences: 27780
Number of extensions: 291954
Number of successful extensions: 576
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)