Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0348
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49570.1 68418.m06135 transglutaminase-like family protein lo...    38   0.007
At5g02390.1 68418.m00162 expressed protein ; expression supporte...    30   1.9  
At3g14540.1 68416.m01842 terpene synthase/cyclase family protein...    28   7.6  

>At5g49570.1 68418.m06135 transglutaminase-like family protein low
           similarity to peptide:N-glycanase PNGase [Mus musculus]
           GI:8347622; contains Pfam profile PF01841:
           Transglutaminase-like superfamily
          Length = 721

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +3

Query: 666 DTALLMELLDWFKHDFFKWVDXPDCDLC 749
           D A L++LL WFK  F +WV+ P CD C
Sbjct: 170 DYAFLLQLLFWFKKSF-RWVNEPPCDFC 196


>At5g02390.1 68418.m00162 expressed protein ; expression supported
           by MPSS
          Length = 835

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +2

Query: 134 IHYSSLRNSWKRITXYCW*NPHDYELRSIKKNVFKDLSKLDSF 262
           + YS L+  W RI+ Y    P+D E +S  K + +DLS+ D +
Sbjct: 764 VGYSVLKEVWVRISCYLRYKPYD-EQQSFDKVMSRDLSRDDGW 805


>At3g14540.1 68416.m01842 terpene synthase/cyclase family protein
           similar to terpene synthase GB:CAA72074 from
           [Arabidopsis thaliana]
          Length = 602

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -2

Query: 182 NTE*CVSKSYVESYNEFILCXRILCSTRRRNMPLCACHYLXQ 57
           N E  V++ Y+  Y +      IL    + N   C CHY+ +
Sbjct: 254 NIEVLVAREYISYYEQEEGYNEILLKFAKLNFNFCQCHYIQE 295


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,368,112
Number of Sequences: 28952
Number of extensions: 266516
Number of successful extensions: 494
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)