Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0347
         (445 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          25   0.43 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.43 
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    23   1.3  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   3.0  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   5.2  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   5.2  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    20   9.2  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    20   9.2  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 24.6 bits (51), Expect = 0.43
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 281 AFLFSFHVFLKL-LCVQNFLPRTNRGNVNKAYFVPQWQN 168
           AFL   H+  KL LC+QN +   ++ +++  Y+V  W +
Sbjct: 600 AFLLK-HIVPKLQLCMQNLVINPHQQHLDAWYWVMDWSD 637


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.6 bits (51), Expect = 0.43
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = -3

Query: 332 VHIMLHLV*IFFYSCH*AFLFSFHVF----LKLLCVQNF 228
           VH++L +   +FY  H  F  +F +F    L LLC+  F
Sbjct: 250 VHLLLLVCIYYFYYMHLLFCCAFIIFTMHLLFLLCIYYF 288



 Score = 20.2 bits (40), Expect = 9.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 193 HILFLNGKIFFNTP*MFWFNLFY*T 119
           H+LF    IFFN   +F   L Y T
Sbjct: 179 HLLFCCAFIFFNMHLLFLLCLDYFT 203


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 408 KLIYTKITFHSIIYSHFSPILRCCNRSYNVT 316
           K+ Y+KI     I+   +   R  N  YN+T
Sbjct: 230 KVFYSKIIISGSIFMTTTSFYRILNSGYNLT 260


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 13/56 (23%), Positives = 24/56 (42%)
 Frame = +2

Query: 179 EEQNMLYLRFPYLSEAESFGHTKALGKHEMRKEMLNDKNRRIFKQDVTLYERLQHL 346
           +E N    + P+L++ ++ GH K   +    K    +  RR  +Q        +HL
Sbjct: 18  DEDNSEDSKDPHLTDQQASGHKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHL 73


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 223 GRKFWTHKSFRKT 261
           GRK W H  FR +
Sbjct: 79  GRKAWKHLDFRNS 91


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 223 GRKFWTHKSFRKT 261
           GRK W H  FR +
Sbjct: 79  GRKAWKHLDFRNS 91


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 269 RKEMLNDKNRRIFKQDVTL 325
           +K+ L  +NR IF+  V L
Sbjct: 117 QKKYLEKRNRHIFRTSVLL 135


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 269 RKEMLNDKNRRIFKQDVTL 325
           +K+ L  +NR IF+  V L
Sbjct: 117 QKKYLEKRNRHIFRTSVLL 135


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,776
Number of Sequences: 336
Number of extensions: 1601
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9985735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)