Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0347
         (445 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    27   1.7  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    26   3.0  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    26   3.0  
SPBC31F10.08 |mde2||Mde2 protein|Schizosaccharomyces pombe|chr 2...    26   3.0  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   4.0  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    25   5.2  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    24   9.1  

>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
            Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 269  RKEMLNDKNRRIFKQDVTLYERLQHLRIGEKW 364
            + E +  K RRI K +  +Y+   H  + EKW
Sbjct: 907  KAENVGIKKRRIMKNENNIYDFEDHSPVREKW 938


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 135 LNQNIYGVLKKILPLR 182
           LNQN +G+++ + PLR
Sbjct: 60  LNQNCFGIIRNVAPLR 75


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 263 EMRKEMLNDKNRRIFKQDVTLYERLQHL 346
           E + +++ D+N+R+ +Q   L  R+QHL
Sbjct: 609 ETQMKLIMDENQRLREQIAVLRSRIQHL 636


>SPBC31F10.08 |mde2||Mde2 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 209

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 206 FPYLSEAESFGHTKALGKHEMRKEMLNDKNRRIFKQ 313
           F  +S  E+F  +K L K + R   L DKN +  K+
Sbjct: 38  FDIISNKETFSESKQLKKAKSRNVTLVDKNTKADKR 73


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 101 IFRGKERLVKQVEPKHLRRIKEDFAIEEQNMLYLR 205
           I   K  +     P+  RR++ + A+ E N+ YLR
Sbjct: 22  ILGAKAMVASTKNPEVKRRLESNIAVSENNIKYLR 56


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 233 FGHTKALGKHEMRKEMLNDKN 295
           + HT  L K    KE+LND N
Sbjct: 779 YSHTSGLNKVSHHKEVLNDPN 799


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 24/82 (29%), Positives = 42/82 (51%)
 Frame = +2

Query: 113  KERLVKQVEPKHLRRIKEDFAIEEQNMLYLRFPYLSEAESFGHTKALGKHEMRKEMLNDK 292
            KE+L+KQ++  H+ R+++    E+++ L  +  Y  E   F       K ++ +E   +K
Sbjct: 1714 KEKLMKQIDEFHVIRVQDLEEREKKDQLLFQ-RYQKELNGF-------KVQLEEE--REK 1763

Query: 293  NRRIFKQDVTLYERLQHLRIGE 358
            N RI +QD     R  H  IG+
Sbjct: 1764 NLRI-RQD----NRHMHAEIGD 1780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,595,121
Number of Sequences: 5004
Number of extensions: 29129
Number of successful extensions: 77
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)