Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0347
         (445 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0370 + 17017567-17018335,17018634-17018914,17019012-170192...    28   3.9  
03_02_0834 - 11630288-11630500,11630531-11630623,11630844-116310...    28   3.9  
12_01_0022 + 165056-165408,165477-165624,166248-166248,166305-16...    27   5.1  
09_04_0075 - 14340458-14340551,14340643-14340814,14340895-143410...    27   5.1  
04_03_0703 - 18870287-18871351,18871542-18871733                       27   9.0  

>09_04_0370 +
           17017567-17018335,17018634-17018914,17019012-17019204,
           17019635-17019798
          Length = 468

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
 Frame = +2

Query: 134 VEPKHLRRIKEDFAIEEQNMLYLRFPYLSEAESFGHT--KALGKHEMRKEMLNDKNRRIF 307
           +E   L R + DF       L L  P +   E  G T     G H +R+  +     R++
Sbjct: 201 IELALLERCRLDFLGAGNCSLSLAAPRVESLEVQGFTWITLRGGHSLRRLSIAKSTGRVY 260

Query: 308 KQDVTLYERLQHLRI-GEKW 364
           K D      L+HL + G +W
Sbjct: 261 KVDTGKLPDLEHLSLRGVQW 280


>03_02_0834 -
           11630288-11630500,11630531-11630623,11630844-11631050,
           11631301-11633089,11633817-11634145
          Length = 876

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = +2

Query: 131 QVEPKHLR-RIKEDFAIEEQNMLYLRFPYLSEAESFGHTKALGKHEMRKEMLNDKNRRIF 307
           Q E + LR R++E   + EQN+ + R   L E+     +  +   E++ + LND+ +++ 
Sbjct: 410 QSEEQRLRERVRE---LAEQNVSFQREVTLLESNRIDVSNKITSLELQNKQLNDELQKVK 466

Query: 308 KQDVTL 325
           K+  TL
Sbjct: 467 KEHDTL 472


>12_01_0022 +
           165056-165408,165477-165624,166248-166248,166305-166602,
           166819-167387,167554-168377
          Length = 730

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 179 EEQNMLYLRFPYLSEAESFGHTKALGKHEMRKEM 280
           E Q +L      LSE++ FGH + L K ++ K M
Sbjct: 298 ERQRILQCAALMLSESQRFGHVQLLVKRQIHKMM 331


>09_04_0075 -
           14340458-14340551,14340643-14340814,14340895-14341066,
           14341617-14341811,14341886-14342053,14342150-14342335,
           14342797-14342881,14342896-14343206,14344222-14344569
          Length = 576

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +2

Query: 23  DFLKIR*SVMKLTLVLLRRNRMPNGNIFRGKERLVKQVEPKHLRRIKEDFAIEEQN 190
           +F+    + M   L   +RNR    + F+G+  +VK+   KH+   KED   +EQN
Sbjct: 338 EFMSWLLNTMHSKLKSRKRNRSIIHDCFQGELEVVKEFHKKHIVEKKEDG--DEQN 391


>04_03_0703 - 18870287-18871351,18871542-18871733
          Length = 418

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 183 SSMAKSSLIRRKCFGSTCFTRRS 115
           S+ + +S+ R +C GS C TRRS
Sbjct: 247 STGSSTSMSRARCCGSACGTRRS 269


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,814,213
Number of Sequences: 37544
Number of extensions: 144991
Number of successful extensions: 281
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)