Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0347
         (445 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22690| Best HMM Match : Collagen (HMM E-Value=0.042)                29   1.7  
SB_45198| Best HMM Match : PX (HMM E-Value=2.3e-10)                    28   4.0  
SB_42711| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_55738| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_53446| Best HMM Match : Neur_chan_memb (HMM E-Value=0.038)          27   5.3  
SB_31580| Best HMM Match : Ion_trans (HMM E-Value=0.043)               27   7.0  
SB_46146| Best HMM Match : Lsm_interact (HMM E-Value=3)                27   7.0  
SB_19015| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_32554| Best HMM Match : BTB (HMM E-Value=2e-13)                     27   9.2  

>SB_22690| Best HMM Match : Collagen (HMM E-Value=0.042)
          Length = 593

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 12/53 (22%), Positives = 28/53 (52%)
 Frame = +2

Query: 17  NSDFLKIR*SVMKLTLVLLRRNRMPNGNIFRGKERLVKQVEPKHLRRIKEDFA 175
           N+D L +  +V   ++++++ +R  NG  ++ K  L   +  +H   ++ D A
Sbjct: 320 NNDRLSVHITVPSKSIIMIQSDRAKNGKFYQNKVWLTSLIYGRHYPLLRVDLA 372


>SB_45198| Best HMM Match : PX (HMM E-Value=2.3e-10)
          Length = 408

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +3

Query: 144 NIYGVLKK-ILPLRNKICFIYV 206
           N   +L+K + PLRN +CF+YV
Sbjct: 387 NTVNILEKNVQPLRNAVCFLYV 408


>SB_42711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 920

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
 Frame = +2

Query: 80  NRMPNGNIFRGKERLVKQVEPKHLRRIKEDFAIEEQNMLYLRFPYLSEAESF---GHTKA 250
           N M    I+R + +++K ++  H+ ++ +   +E +NMLYL   Y +  E F    H   
Sbjct: 194 NEMNLKKIYR-EVQIMKLLQHPHIVKLYQ--VMETKNMLYLVTDYANNGEMFDYLAHHGR 250

Query: 251 LGKHEMRKEML 283
           L + E RK+ +
Sbjct: 251 LPEKEARKKFV 261


>SB_55738| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 80  NRMPNGNIFRGKERLV 127
           NR+ N N+FRGKE +V
Sbjct: 49  NRVKNNNLFRGKEEIV 64


>SB_53446| Best HMM Match : Neur_chan_memb (HMM E-Value=0.038)
          Length = 406

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 80  NRMPNGNIFRGKERLV 127
           NR+ N N+FRGKE +V
Sbjct: 49  NRVKNNNLFRGKEEIV 64


>SB_31580| Best HMM Match : Ion_trans (HMM E-Value=0.043)
          Length = 532

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 92  NGNIFRGKERLVKQVEPKHLRRIKEDFAIEEQNM 193
           +GNI   + R+ K   P+H+ R + +FA E + +
Sbjct: 48  DGNIRHNRARIAKGEVPQHMLRRQREFAKERERV 81


>SB_46146| Best HMM Match : Lsm_interact (HMM E-Value=3)
          Length = 198

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +2

Query: 83  RMPNGNIFRGKERLVKQVEPKHLRRIKEDFAIEEQNMLYLRFPYLS 220
           R  N + FRGK R  K    K  R  KE+  ++     YL  P LS
Sbjct: 4   RKKNCHTFRGKNRAAKLSGKKKYRFKKEEKKLQVAEKWYLSNPDLS 49


>SB_19015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 357

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 17/69 (24%), Positives = 30/69 (43%)
 Frame = +2

Query: 101 IFRGKERLVKQVEPKHLRRIKEDFAIEEQNMLYLRFPYLSEAESFGHTKALGKHEMRKEM 280
           I+R  E +    EP     I E   +  + + +   P +    S+G    + KH++R+  
Sbjct: 158 IWRPVEVVCYSTEPSEEHFINEVVYMASEWVFWFVIPAIIICISYGRIYGVAKHQLRQIA 217

Query: 281 LNDKNRRIF 307
             D+ RR F
Sbjct: 218 SLDRTRRGF 226


>SB_32554| Best HMM Match : BTB (HMM E-Value=2e-13)
          Length = 133

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +3

Query: 66  CYYDGTVCQMATYSEEKNV**NKLNQNIYGVLKKILPLRNKICFIYVSPICPRQKVLD 239
           C+Y+G V +M  Y     V    +   +Y   K ILP   ++C+ Y S I   + VL+
Sbjct: 44  CFYEG-VLEMLRYLYRDEV---IITNVLYLAKKYILPGLEELCYEYFSRIMGPKNVLE 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,964,791
Number of Sequences: 59808
Number of extensions: 192645
Number of successful extensions: 488
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)