Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0347
         (445 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81034-1|CAB02726.1|  194|Caenorhabditis elegans Hypothetical pr...    32   0.16 
L14429-2|AAP68927.1|  229|Caenorhabditis elegans Hypothetical pr...    29   1.1  
L14429-1|AAA28219.2|  575|Caenorhabditis elegans Hypothetical pr...    29   1.1  
AL023834-2|CAA19479.2|  217|Caenorhabditis elegans Hypothetical ...    29   1.1  
AF026212-1|AAF99971.1|  807|Caenorhabditis elegans Hypothetical ...    29   1.5  
Z67884-4|CAH60753.1|  905|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z67884-3|CAA91809.2|  921|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AC006693-8|AAQ91896.1|  281|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z81034-1|CAB02726.1|  194|Caenorhabditis elegans Hypothetical
           protein C15C6.1 protein.
          Length = 194

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
 Frame = -3

Query: 353 RFLGAVIVHIMLHLV*IFFYSCH*AFLFSFHVFLK---LLCVQNFLPRTNRGNVNKAYFV 183
           RF+  V+   M H++     SC+   +FSF+ F+K   +L + N++  T  G  N A+++
Sbjct: 84  RFVWPVVAISMFHVI----LSCYALVIFSFYFFIKPYYILMISNWMFDTMHGEKNAAFYL 139


>L14429-2|AAP68927.1|  229|Caenorhabditis elegans Hypothetical
           protein ZK652.6b protein.
          Length = 229

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +2

Query: 308 KQDVTLYERLQHLRIGEK 361
           K D+ L E LQHLR+GEK
Sbjct: 113 KPDIALKEALQHLRLGEK 130


>L14429-1|AAA28219.2|  575|Caenorhabditis elegans Hypothetical
           protein ZK652.6a protein.
          Length = 575

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +2

Query: 308 KQDVTLYERLQHLRIGEK 361
           K D+ L E LQHLR+GEK
Sbjct: 459 KPDIALKEALQHLRLGEK 476


>AL023834-2|CAA19479.2|  217|Caenorhabditis elegans Hypothetical
           protein Y32B12A.3 protein.
          Length = 217

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +3

Query: 66  CYYDGTVCQMATYSEEKNV**NKLNQNIY 152
           C +DG+VCQ  T ++E +V  ++ N+ I+
Sbjct: 167 CLWDGSVCQETTRTDESSVAIHEANEKIF 195


>AF026212-1|AAF99971.1|  807|Caenorhabditis elegans Hypothetical
           protein F52G3.3 protein.
          Length = 807

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +2

Query: 260 HEMRKEMLNDKNRRIFKQDVTLYERLQHL 346
           H+ RKE L+ +  RIF+ +V   +RL+HL
Sbjct: 598 HQQRKEKLSAEVGRIFRGNVKSVKRLRHL 626


>Z67884-4|CAH60753.1|  905|Caenorhabditis elegans Hypothetical
           protein T14G8.3b protein.
          Length = 905

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 21/79 (26%), Positives = 37/79 (46%)
 Frame = +2

Query: 128 KQVEPKHLRRIKEDFAIEEQNMLYLRFPYLSEAESFGHTKALGKHEMRKEMLNDKNRRIF 307
           K VEPK  ++I     I+E     +    L+E E     K LG  E +++  +D+   + 
Sbjct: 600 KPVEPK-AKKINVALTIKETKTDNID---LNEEEVTAAKKVLGDFEQKEKEKHDREEAMN 655

Query: 308 KQDVTLYERLQHLRIGEKW 364
           + +  LY+    L  GE++
Sbjct: 656 RLEGLLYDLAVRLEDGEEY 674


>Z67884-3|CAA91809.2|  921|Caenorhabditis elegans Hypothetical
           protein T14G8.3a protein.
          Length = 921

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 21/79 (26%), Positives = 37/79 (46%)
 Frame = +2

Query: 128 KQVEPKHLRRIKEDFAIEEQNMLYLRFPYLSEAESFGHTKALGKHEMRKEMLNDKNRRIF 307
           K VEPK  ++I     I+E     +    L+E E     K LG  E +++  +D+   + 
Sbjct: 616 KPVEPK-AKKINVALTIKETKTDNID---LNEEEVTAAKKVLGDFEQKEKEKHDREEAMN 671

Query: 308 KQDVTLYERLQHLRIGEKW 364
           + +  LY+    L  GE++
Sbjct: 672 RLEGLLYDLAVRLEDGEEY 690


>AC006693-8|AAQ91896.1|  281|Caenorhabditis elegans Hypothetical
           protein W02H5.9 protein.
          Length = 281

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 236 QNFLPRTNRGNVNKAYF 186
           QNFLP +NRG + K +F
Sbjct: 257 QNFLPISNRGKLRKNFF 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,603,030
Number of Sequences: 27780
Number of extensions: 157336
Number of successful extensions: 415
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)