Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0347
         (445 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23620.1 68416.m02971 brix domain-containing protein contains...    38   0.004
At3g28770.1 68416.m03591 expressed protein                             31   0.46 
At5g37478.1 68418.m04513 Expressed protein                             27   7.5  
At4g24100.1 68417.m03460 protein kinase family protein contains ...    27   7.5  
At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family pr...    27   7.5  
At3g02040.1 68416.m00167 glycerophosphoryl diester phosphodieste...    26   10.0 

>At3g23620.1 68416.m02971 brix domain-containing protein contains
           Pfam domain, PF04427: Brix domain
          Length = 314

 Score = 37.5 bits (83), Expect = 0.004
 Identities = 20/83 (24%), Positives = 39/83 (46%)
 Frame = +2

Query: 65  VLLRRNRMPNGNIFRGKERLVKQVEPKHLRRIKEDFAIEEQNMLYLRFPYLSEAESFGHT 244
           +++RRNR+PN ++ +   R  K    K  + + +D  + +   +Y+    L E + F  +
Sbjct: 227 LVIRRNRLPNDSLMKEAMRTSKDKPKKKEKNVDQDAVLGKTGKIYMPDQKLKEMKLFDKS 286

Query: 245 KALGKHEMRKEMLNDKNRRIFKQ 313
           K   K E +   L  K   + K+
Sbjct: 287 KG-SKRERKDAKLKHKEETVAKK 308


>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = +2

Query: 113  KERLVKQVEPKHLRRIKEDFAIEEQNMLYLRFPYLSEAESFGHTKALGKHEMRKEM--LN 286
            +E   K+    H  + KED    E N    +     E +    +K+  K E +K+M  L 
Sbjct: 1065 EETKEKKESENHKSKKKEDKKEHEDNKSMKKEEDKKEKKKHEESKSRKKEEDKKDMEKLE 1124

Query: 287  DKNRRIFKQDVTLYERLQHLRIGEK 361
            D+N    K+D    ++ QH+++ +K
Sbjct: 1125 DQNSNKKKEDKNEKKKSQHVKLVKK 1149


>At5g37478.1 68418.m04513 Expressed protein
          Length = 96

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +2

Query: 113 KERLVKQVEPKHLRRIKEDFAIEEQNMLYLRFPYLSEAES 232
           +ERL K +E + +R ++++   + Q M +   P+L +  S
Sbjct: 20  EERLQKMIEEEEIRMLRKEMVPKAQLMPFFDRPFLPQRSS 59


>At4g24100.1 68417.m03460 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 709

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 222 RQKVLDTQKL*ENMK*EKKCSMTRIEE 302
           R++V D+ +L ENM  ++K S T +EE
Sbjct: 394 REQVFDSLQLYENMNGKEKVSNTEVEE 420


>At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family
           protein / F-box family protein contains similarity to
           F-box protein FBL2 GI:6010699 from [Rattus norvegicus];
           contains Pfam profiles PF00514:
           Armadillo/beta-catenin-like repeat, PF00646: F-box
           domain
          Length = 930

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +2

Query: 188 NMLYLRFPYLSEAESFGHTKALGKHEMRKEMLNDKNRRIFKQDVTLYERLQHLRIG 355
           N+ YLRF  +  A+S  H KA    E+  +             V  +E L+ L++G
Sbjct: 111 NLHYLRFRGVESADSLIHLKARNLIEVSGDYCKKITDATLSMIVARHEALESLQLG 166


>At3g02040.1 68416.m00167 glycerophosphoryl diester
           phosphodiesterase family protein contains Pfam profile
           PF03009: Glycerophosphoryl diester phosphodiesterase
           family
          Length = 361

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -2

Query: 114 FPLNMLPFGIRFRRNNTKVNFITDYLIFKKSLLFYEK 4
           FPL+ + F ++  R+   + F  D++  ++  + YEK
Sbjct: 71  FPLDFIEFDVQVTRDGCPIIFHDDFIYSEEQGVVYEK 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,819,331
Number of Sequences: 28952
Number of extensions: 137096
Number of successful extensions: 282
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)