Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0346
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.09 |||mitochondrial type II fatty acid synthase componen...    74   2e-14
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    29   1.0  
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos...    28   1.8  
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc...    27   3.1  
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    27   3.1  
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    27   4.1  
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    26   7.1  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   7.1  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    25   9.4  

>SPAC4H3.09 |||mitochondrial type II fatty acid synthase
           component|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 35/70 (50%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
 Frame = +3

Query: 267 KSRVLLVLQLYDKI-NPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERL 443
           + R+L V+  +DKI +P+++T  S F NDLGLDSLD VEV+MA+E+EF  +IPD DA+ +
Sbjct: 36  EKRILKVVSSFDKIQDPKKVTPTSTFANDLGLDSLDAVEVVMAIEEEFSIQIPDKDADEI 95

Query: 444 VRPKDIVQYI 473
               D + YI
Sbjct: 96  TSVGDAISYI 105


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 17/72 (23%), Positives = 33/72 (45%)
 Frame = +3

Query: 258 DLIKSRVLLVLQLYDKINPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAE 437
           DL+ + +     LY ++  ++      F     + SLD+   I+ M+   GFEI     E
Sbjct: 256 DLVTTTITFTPLLYAQLYQQRCKTFRPFHLPSDVHSLDYERAILGMKLSCGFEILYNSKE 315

Query: 438 RLVRPKDIVQYI 473
            + +  +I +Y+
Sbjct: 316 NVEKRTEIDEYL 327


>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
           Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 270 SRVLLVLQLYDKINPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEF 407
           S+VLL LQ    I P  L  + + M +LG +  D+ E ++  + ++
Sbjct: 296 SQVLLTLQSVKDIEPPALWQEPNSMEELGKELKDNKEQLVKQDQKY 341


>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 203 WERETWYPQVQRWPSPHLRPYK 268
           WE + + P   RW   H +P+K
Sbjct: 156 WENDVYGPNEDRWDENHAQPHK 177


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 38  NGCCEYFSKCFRW 76
           NG CE++ K FRW
Sbjct: 326 NGACEHYKKSFRW 338


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -1

Query: 473 NVLDNVFWSNQSLCIT--IRYLKSKFIFHCH 387
           N LDNVF S + L  +  + YL+ +F FHC+
Sbjct: 64  NKLDNVFSSLEWLTKSDAVIYLEDQFHFHCY 94


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 689 NLHFLHNGLKCTDNVCVKLKQKLSNH*TILLG 594
           N+ F+ NG+   +NVC KL  +  N  +I  G
Sbjct: 109 NILFVQNGMGAVENVCGKLWPEEQNKPSIYQG 140


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 209  RETWYPQVQRWPSPHLRPYKK 271
            +ETWY ++QRW    L  Y+K
Sbjct: 1296 KETWYEKLQRWEDA-LSAYEK 1315


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -1

Query: 554 VIVSKIQLVQNYEVYIFLLFINIFLVSNVLDNVFWSNQS 438
           ++ S + L  +Y   +FL+F+   +   V  NV+ S Q+
Sbjct: 308 ILQSALYLTSSYHFVLFLIFVEGLIGGTVYVNVYHSLQT 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,114,179
Number of Sequences: 5004
Number of extensions: 62717
Number of successful extensions: 168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)