Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0346
(794 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1017 - 13229717-13229893,13231518-13231748 80 2e-15
07_01_0840 + 6831220-6831438,6831515-6831691 75 5e-14
03_05_0205 - 21965782-21965979,21969169-21969417 71 1e-12
05_04_0108 - 18046813-18046989,18047331-18047423 68 8e-12
11_04_0473 + 18156314-18156388,18157255-18157356,18157714-18157983 44 2e-04
08_02_1499 - 27558872-27559015,27559544-27559666,27560214-275603... 40 0.003
12_02_0619 - 21276591-21276719,21276798-21276920,21277425-212775... 39 0.005
09_06_0117 - 20953136-20953261,20953621-20953743,20953859-209539... 38 0.009
03_06_0743 - 35906119-35906247,35906747-35906869,35907841-359079... 34 0.11
03_01_0453 - 3471656-3471819,3472416-3472580,3473062-3473145,347... 29 3.2
12_02_1221 - 27130321-27130491,27130616-27130664,27131120-271311... 28 7.4
09_02_0435 - 9384225-9384412,9385084-9385133,9385209-9385274,938... 28 7.4
08_01_0041 - 290333-290698,290854-291861 28 9.8
>03_02_1017 - 13229717-13229893,13231518-13231748
Length = 135
Score = 80.2 bits (189), Expect = 2e-15
Identities = 37/72 (51%), Positives = 55/72 (76%), Gaps = 1/72 (1%)
Frame = +3
Query: 264 IKSRVLLVLQLYDKIN-PEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAER 440
+ R++ V++ + KI+ P ++T D+HF NDLGLDSLD VEV+MA+E+EFGFEIPD +A++
Sbjct: 58 VTERIVKVVRNFQKIDDPAKVTPDAHFKNDLGLDSLDAVEVVMALEEEFGFEIPDNEADK 117
Query: 441 LVRPKDIVQYIA 476
+ K V +IA
Sbjct: 118 IDSIKVAVDFIA 129
>07_01_0840 + 6831220-6831438,6831515-6831691
Length = 131
Score = 75.4 bits (177), Expect = 5e-14
Identities = 34/77 (44%), Positives = 56/77 (72%)
Frame = +3
Query: 249 LTLDLIKSRVLLVLQLYDKINPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDG 428
LT D + R+L VL+ + K++P +++ ++HF DLGLDSLD VEV+MA+E+EF EIPD
Sbjct: 50 LTRDEVVDRLLDVLKCHPKVDPSKVSPEAHFEKDLGLDSLDTVEVVMAIEEEFKLEIPDQ 109
Query: 429 DAERLVRPKDIVQYIAD 479
+A+++ ++Y+A+
Sbjct: 110 EADKIDSLPLAIEYVAN 126
>03_05_0205 - 21965782-21965979,21969169-21969417
Length = 148
Score = 70.5 bits (165), Expect = 1e-12
Identities = 33/81 (40%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Frame = +3
Query: 237 GGPPLTLD--LIKSRVLLVLQLYDKINPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFG 410
GGPP +++RV+ +++ +D+I+ +++T + F DL LDSLD VE++MA E EF
Sbjct: 54 GGPPRDFSEGAVRARVVELVKKFDRIDADKVTETADFQRDLSLDSLDRVELVMAFEQEFS 113
Query: 411 FEIPDGDAERLVRPKDIVQYI 473
EIPD A++L D+ +YI
Sbjct: 114 VEIPDDKADKLSCCADVAKYI 134
>05_04_0108 - 18046813-18046989,18047331-18047423
Length = 89
Score = 68.1 bits (159), Expect = 8e-12
Identities = 29/52 (55%), Positives = 40/52 (76%)
Frame = +3
Query: 321 LTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVRPKDIVQYIA 476
+T ++HF DLGLDSLD VE++MA E+EFGFEIPD +AE++ K V ++A
Sbjct: 32 VTPNAHFQKDLGLDSLDTVEIVMAFEEEFGFEIPDNEAEKIDSIKTAVDFVA 83
>11_04_0473 + 18156314-18156388,18157255-18157356,18157714-18157983
Length = 148
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/52 (38%), Positives = 33/52 (63%)
Frame = +3
Query: 318 QLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVRPKDIVQYI 473
+L +S F +LG DSLD VE++MA+E+EFG + + +A+ + +D I
Sbjct: 83 KLAPESQF-TELGADSLDTVEIVMALEEEFGITVEEDNAQSITTIQDAADLI 133
>08_02_1499 -
27558872-27559015,27559544-27559666,27560214-27560312,
27561257-27561307
Length = 138
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +3
Query: 345 NDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVRPKDIVQYI 473
+DLG DSLD VE++M +E+EF + + A+ + +D I
Sbjct: 82 SDLGADSLDTVEIVMGLEEEFHISVEESSAQSIATVEDAAALI 124
>12_02_0619 -
21276591-21276719,21276798-21276920,21277425-21277535,
21277887-21277901,21279117-21279188
Length = 149
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = +3
Query: 321 LTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVRPKDIVQYI 473
+T +S F ++LG DSLD VE++M +E+EF + + A+ + +D I
Sbjct: 91 VTGESKF-SELGADSLDTVEIVMGLEEEFNITVDETSAQDIATVQDAANLI 140
>09_06_0117 -
20953136-20953261,20953621-20953743,20953859-20953957,
20955344-20955403
Length = 135
Score = 37.9 bits (84), Expect = 0.009
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +3
Query: 348 DLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVRPKDIVQYI 473
DLG DSLD VE++M +E+ F + + A+ + +D + I
Sbjct: 86 DLGADSLDTVEIVMGLEEAFKISVDESSAQSIATVEDAAELI 127
>03_06_0743 -
35906119-35906247,35906747-35906869,35907841-35907954,
35908092-35908148
Length = 140
Score = 34.3 bits (75), Expect = 0.11
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 348 DLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVRPKD 458
DLG DSLD VE++M +E+ F + + A+ + +D
Sbjct: 90 DLGADSLDTVEIVMGLEEAFQITVDESSAQVIQTVED 126
>03_01_0453 -
3471656-3471819,3472416-3472580,3473062-3473145,
3473304-3473375,3473496-3473574,3473894-3473990,
3474064-3474116,3474257-3474386,3474464-3474498,
3476108-3476212,3476759-3476833,3477671-3477799,
3477918-3478097,3478737-3478820,3478943-3479059,
3479170-3479242,3479316-3479437,3479519-3479641,
3479917-3479989,3480218-3480396,3480699-3480837,
3481105-3481259,3481570-3481875
Length = 912
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 133 LRCSKSSAQLKPLSKYTKVRPFRMGTRNMVSASTAVALPSP 255
L+ SK A++K + K+ + PF N + +VALP P
Sbjct: 154 LKISKLEAEVKQIYKFPLILPFFQHQENKMLLFLSVALPQP 194
>12_02_1221 -
27130321-27130491,27130616-27130664,27131120-27131188,
27131845-27131939,27132032-27132121,27132885-27132968,
27133122-27133211,27133310-27133624,27134184-27134399,
27134736-27134774,27135337-27135408
Length = 429
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 240 GPPLTLDLIKSRVLLVLQLYDKINPEQLTVDSHFMN 347
G PL L + + ++ VL LYD +N +T D MN
Sbjct: 70 GQPLALLMKMNPLVSVLHLYDVVNTPGVTADISHMN 105
>09_02_0435 -
9384225-9384412,9385084-9385133,9385209-9385274,
9385360-9385451,9385893-9385975,9386181-9386259,
9386888-9387115,9387196-9387297,9387719-9387854,
9387984-9388033,9389391-9389618
Length = 433
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -2
Query: 136 ATVERRHVTDVLYVVDLRNRPPKALRKIFAAAISSSSRN 20
AT + V D ++VVDL ALRK+F ++I + N
Sbjct: 242 ATKDGTGVRDYIHVVDLAEGHIAALRKLFESSIGCQAYN 280
>08_01_0041 - 290333-290698,290854-291861
Length = 457
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +3
Query: 291 QLYDKINPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFG 410
QL DK+ + T S + DL + D ++V+++++ E+G
Sbjct: 252 QLLDKLIDDHATKRSSSVLDLDNEESDFIDVLLSIQHEYG 291
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,359,075
Number of Sequences: 37544
Number of extensions: 374378
Number of successful extensions: 793
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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