Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0346
(794 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132860-18|CAB60498.1| 133|Caenorhabditis elegans Hypothetical... 138 4e-33
AF039048-3|AAK68334.1| 246|Caenorhabditis elegans Hypothetical ... 99 3e-21
U00033-7|AAC48302.2| 145|Caenorhabditis elegans Hypothetical pr... 77 1e-14
U70853-1|AAB09143.2| 439|Caenorhabditis elegans Hypothetical pr... 30 1.7
U29488-4|AAL27235.1| 401|Caenorhabditis elegans Hypothetical pr... 30 2.2
AF024496-1|AAB70339.1| 542|Caenorhabditis elegans Hypothetical ... 30 2.2
Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical pr... 29 2.9
AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical... 29 2.9
Z81521-1|CAB04226.1| 319|Caenorhabditis elegans Hypothetical pr... 29 5.1
AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transport... 29 5.1
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z99280-3|CAE18018.1| 215|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z83317-3|CAB05897.1| 217|Caenorhabditis elegans Hypothetical pr... 28 8.9
>AL132860-18|CAB60498.1| 133|Caenorhabditis elegans Hypothetical
protein Y56A3A.19 protein.
Length = 133
Score = 138 bits (334), Expect = 4e-33
Identities = 68/132 (51%), Positives = 90/132 (68%)
Frame = +3
Query: 102 RTSVTCRLSTVALQQKFSTIKAAVKIYKSQALQNGNEKHGIRKYSGGPPLTLDLIKSRVL 281
R +V+ L TV+++ S ++ L IR+YS PLT ++ R++
Sbjct: 3 RVAVSAALRTVSVRA-LSNASVQQRVITPILLSAQKPSFQIRQYSAKAPLTKKTLEERIV 61
Query: 282 LVLQLYDKINPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVRPKDI 461
LVL LYDKI+ ++LT+DS F DLGLDSLDHVEV+MAME+EFGFEIPDGDA+R P+DI
Sbjct: 62 LVLSLYDKIDAKKLTMDSDFSKDLGLDSLDHVEVVMAMEEEFGFEIPDGDADRFKTPRDI 121
Query: 462 VQYIADKEDIYE 497
QYIADKED++E
Sbjct: 122 FQYIADKEDVFE 133
>AF039048-3|AAK68334.1| 246|Caenorhabditis elegans Hypothetical
protein F16B4.6 protein.
Length = 246
Score = 99.1 bits (236), Expect = 3e-21
Identities = 47/86 (54%), Positives = 61/86 (70%), Gaps = 1/86 (1%)
Frame = +3
Query: 243 PPLTLDLIKSRVL-LVLQLYDKINPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEI 419
P L++ V V+ I+ +LT+DS F DLGLD LDHVEV+MA+E+EFGFEI
Sbjct: 161 PEKAAKLLQKEVFRFVIVTSSAISSTKLTMDSDFSTDLGLDFLDHVEVVMAIEEEFGFEI 220
Query: 420 PDGDAERLVRPKDIVQYIADKEDIYE 497
PDGDA+R P+DI+QYIADK D++E
Sbjct: 221 PDGDADRFKTPRDILQYIADKVDVFE 246
>U00033-7|AAC48302.2| 145|Caenorhabditis elegans Hypothetical
protein F37C12.3 protein.
Length = 145
Score = 77.0 bits (181), Expect = 1e-14
Identities = 37/90 (41%), Positives = 58/90 (64%), Gaps = 5/90 (5%)
Frame = +3
Query: 243 PP--LTLDLIKSRVLLVLQLYDKINPEQ---LTVDSHFMNDLGLDSLDHVEVIMAMEDEF 407
PP LT ++ RVL ++ +D+ ++ L +D+ D G DSLD VE++MA+EDEF
Sbjct: 56 PPKQLTFKQVEDRVLKAVRSWDRFPADKESLLKLDADLSKDFGFDSLDQVEIVMALEDEF 115
Query: 408 GFEIPDGDAERLVRPKDIVQYIADKEDIYE 497
GFEIP D+++ +D +YI ++ED+YE
Sbjct: 116 GFEIPLQDSDKFKTIRDAFKYICEREDVYE 145
>U70853-1|AAB09143.2| 439|Caenorhabditis elegans Hypothetical
protein M01H9.2 protein.
Length = 439
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +1
Query: 130 PLRCSKSSAQLKPLSKYTKVRPFRMGTRNMVSAST 234
P C K A+LKP SK TK P RN + ST
Sbjct: 78 PRLCGKCYAKLKPDSKRTKTIPVTQFKRNPAATST 112
>U29488-4|AAL27235.1| 401|Caenorhabditis elegans Hypothetical
protein C56C10.7a protein.
Length = 401
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 339 FMNDLGLDSLDHVEVI-MAMEDEFGFEIPDGDAERLVRPKDIVQYI 473
F+ + LD H V +A EDEFG D +L++PKDI Q++
Sbjct: 205 FLEKVELDPSQHYNVTSIAHEDEFG------DVGKLLKPKDIRQFL 244
>AF024496-1|AAB70339.1| 542|Caenorhabditis elegans Hypothetical
protein ZC178.1 protein.
Length = 542
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +3
Query: 300 DKINPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVRP-KDIVQYIA 476
+K+N +L + + L+ L+ VE++M++ED G D+ LV +D + +
Sbjct: 112 EKLNSVELVMSVEDTIGVALEELNSVELVMSVEDTIGVVREKLDSVELVMSVEDTIGVVR 171
Query: 477 DKEDIYE 497
+K D E
Sbjct: 172 EKLDSVE 178
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 360 DSLDHVEVIMAMEDEFGFEIPDGDAERLVRP-KDIVQYIADKEDIYE 497
+ LD VE++M++ED G + + D+ LVR +D + + ++ D E
Sbjct: 172 EKLDSVELVMSVEDIIGVVLEELDSVELVRSVEDTIGVVLEELDSVE 218
>Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical protein
W04A8.7 protein.
Length = 1792
Score = 29.5 bits (63), Expect = 2.9
Identities = 25/96 (26%), Positives = 43/96 (44%)
Frame = +3
Query: 159 IKAAVKIYKSQALQNGNEKHGIRKYSGGPPLTLDLIKSRVLLVLQLYDKINPEQLTVDSH 338
+K A KIY + + NG E K + L+K ++ + +L INP + +
Sbjct: 1644 LKDAEKIYTNSVVFNGAESVYSLKAKEMFEMAEMLVKDQMDTLGELERNINPSAINDAAA 1703
Query: 339 FMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLV 446
L +DS DH++ MED E + D + ++
Sbjct: 1704 AQRGLAMDSDDHMD---EMEDHPTEEEEEDDDDEIM 1736
>AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical
protein W04A8.7 protein.
Length = 1792
Score = 29.5 bits (63), Expect = 2.9
Identities = 25/96 (26%), Positives = 43/96 (44%)
Frame = +3
Query: 159 IKAAVKIYKSQALQNGNEKHGIRKYSGGPPLTLDLIKSRVLLVLQLYDKINPEQLTVDSH 338
+K A KIY + + NG E K + L+K ++ + +L INP + +
Sbjct: 1644 LKDAEKIYTNSVVFNGAESVYSLKAKEMFEMAEMLVKDQMDTLGELERNINPSAINDAAA 1703
Query: 339 FMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLV 446
L +DS DH++ MED E + D + ++
Sbjct: 1704 AQRGLAMDSDDHMD---EMEDHPTEEEEEDDDDEIM 1736
>Z81521-1|CAB04226.1| 319|Caenorhabditis elegans Hypothetical
protein F32A11.1 protein.
Length = 319
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 185 KSGPSEWERETWYPQVQRWPS 247
+ G WER+TW VQ +PS
Sbjct: 225 RRGVGVWERDTWVESVQSYPS 245
>AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transporter
family protein 2 protein.
Length = 1551
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = -1
Query: 551 IVSKIQLVQNYEVYIFLLFINI-FLVSNVLDNVFWS 447
I+SK+ + +Y Y LLF+ I FL S++ ++F+S
Sbjct: 136 IISKVAKIFDYTDYTLLLFVLILFLFSSIAMSIFFS 171
>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
F32H2.5 protein.
Length = 2586
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +3
Query: 318 QLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVRPKDIVQYIADK 482
QL D++ ++DLGLDSL VE+ A+E + + + L K +Q +AD+
Sbjct: 2207 QLNADAN-LSDLGLDSLMGVEIKQALERDHDIVLSMKEIRTLTLNK--LQQLADQ 2258
>Z99280-3|CAE18018.1| 215|Caenorhabditis elegans Hypothetical
protein Y57G11B.7 protein.
Length = 215
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 239 TAVLADTMFLVPILKGLTFVYFDSGFN 159
T ++ TMFL P+ G T VYF G++
Sbjct: 187 TLIICATMFLHPLSMGSTNVYFVPGYH 213
>Z83317-3|CAB05897.1| 217|Caenorhabditis elegans Hypothetical
protein F13G11.2 protein.
Length = 217
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 239 TAVLADTMFLVPILKGLTFVYFDSGFN 159
T ++ TMFL P+ G T VYF G++
Sbjct: 189 TLIICATMFLHPLSMGSTNVYFVPGYH 215
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,479,989
Number of Sequences: 27780
Number of extensions: 364753
Number of successful extensions: 937
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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