Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0346
(794 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g65290.1 68414.m07403 acyl carrier family protein / ACP famil... 79 3e-15
At2g44620.1 68415.m05554 acyl carrier protein, mitochondrial / A... 75 5e-14
At5g47630.1 68418.m05880 acyl carrier family protein / ACP famil... 70 2e-12
At4g25050.1 68417.m03594 acyl carrier family protein / ACP famil... 44 1e-04
At3g05020.1 68416.m00545 acyl carrier protein 1, chloroplast (AC... 42 6e-04
At1g54630.1 68414.m06230 acyl carrier protein 3, chloroplast (AC... 41 8e-04
At1g54580.1 68414.m06225 acyl carrier protein, chloroplast, puta... 39 0.003
At5g27200.1 68418.m03245 acyl carrier protein, chloroplast, puta... 38 0.006
At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contai... 28 6.2
At1g20730.1 68414.m02597 expressed protein contains TIGRFAM TIGR... 28 6.2
At4g04670.1 68417.m00683 Met-10+ like family protein / kelch rep... 28 8.2
>At1g65290.1 68414.m07403 acyl carrier family protein / ACP family
protein similar to SP|P53665 Acyl carrier protein,
mitochondrial precursor (ACP) (NADH-ubiquinone
oxidoreductase 9.6 kDa subunit) (MtACP-1) {Arabidopsis
thaliana}; contains InterPro accession IPR003881:
Isochorismatase
Length = 126
Score = 79.0 bits (186), Expect = 3e-15
Identities = 35/71 (49%), Positives = 53/71 (74%)
Frame = +3
Query: 264 IKSRVLLVLQLYDKINPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERL 443
+ RVL V++ + K++P ++T ++F NDLGLDSLD VEV+MA+E+EFGFEIPD +A+++
Sbjct: 50 VTDRVLSVVKNFQKVDPSKVTPKANFQNDLGLDSLDSVEVVMALEEEFGFEIPDNEADKI 109
Query: 444 VRPKDIVQYIA 476
V +IA
Sbjct: 110 QSIDLAVDFIA 120
>At2g44620.1 68415.m05554 acyl carrier protein, mitochondrial / ACP
/ NADH-ubiquinone oxidoreductase 9.6 kDa subunit
identical to SP|P53665 Acyl carrier protein,
mitochondrial precursor (ACP) (NADH-ubiquinone
oxidoreductase 9.6 kDa subunit) (MtACP-1) {Arabidopsis
thaliana}; identical to cDNA acyl carrier protein
precursor GI:468265
Length = 122
Score = 74.9 bits (176), Expect = 5e-14
Identities = 35/85 (41%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Frame = +3
Query: 222 IRKYSGGPP-LTLDLIKSRVLLVLQLYDKINPEQLTVDSHFMNDLGLDSLDHVEVIMAME 398
IR +S L+ + + RVL V++ + K++P ++T + HF NDLGLDSLD VE++MA+E
Sbjct: 31 IRSFSSHDDHLSREAVVDRVLDVVKSFPKVDPSKVTPEVHFQNDLGLDSLDTVEIVMAIE 90
Query: 399 DEFGFEIPDGDAERLVRPKDIVQYI 473
+EF EIPD +A+++ ++Y+
Sbjct: 91 EEFKLEIPDKEADKIDSCSLAIEYV 115
>At5g47630.1 68418.m05880 acyl carrier family protein / ACP family
protein similar to acyl carrier protein, mitochondrial
precursor (ACP) (NADH-ubiquinone oxidoreductase 9.6 kDa
subunit) from {Arabidopsis thaliana} SP|P53665,
{Neurospora crassa} SP|P11943; contains Pfam profile
PF00550: Phosphopantetheine attachment site
Length = 131
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/72 (45%), Positives = 47/72 (65%)
Frame = +3
Query: 258 DLIKSRVLLVLQLYDKINPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAE 437
D I SRV+ +++ YDK N ++T + F DL LDSLD E++MA+E+EF EIPD A+
Sbjct: 49 DQILSRVIELVKKYDKTNTSEVTERADFQKDLSLDSLDKTELVMAIEEEFSIEIPDEKAD 108
Query: 438 RLVRPKDIVQYI 473
+L D+ YI
Sbjct: 109 KLTCCGDVATYI 120
>At4g25050.1 68417.m03594 acyl carrier family protein / ACP family
protein similar to Acyl carrier protein, chloroplast
precursor from {Spinacia oleracea} SP|P23235, {Casuarina
glauca} SP|P93092; contains InterPro accession
IPR003881: Isochorismatase
Length = 137
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/53 (37%), Positives = 33/53 (62%)
Frame = +3
Query: 321 LTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVRPKDIVQYIAD 479
LT +S F + LG DSLD VE++MA+E++F + + DA+ + ++ I D
Sbjct: 75 LTAESKF-SALGADSLDTVEIVMALEEKFNISVEESDAQNITTIQEAADLIED 126
>At3g05020.1 68416.m00545 acyl carrier protein 1, chloroplast
(ACP-1) identical to SP|P11829 Acyl carrier protein 1,
chloroplast precursor (ACP) {Arabidopsis thaliana}
Length = 137
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/69 (26%), Positives = 38/69 (55%)
Frame = +3
Query: 273 RVLLVLQLYDKINPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVRP 452
+V +++ + P++ V DLG DSLD VE++M +E+EF ++ + A+++
Sbjct: 63 KVSAIVKKQLSLTPDKKVVAETKFADLGADSLDTVEIVMGLEEEFNIQMAEEKAQKIATV 122
Query: 453 KDIVQYIAD 479
+ + I +
Sbjct: 123 EQAAELIEE 131
>At1g54630.1 68414.m06230 acyl carrier protein 3, chloroplast
(ACP-3) nearly identical to SP|P25702 Acyl carrier
protein 3, chloroplast precursor (ACP) {Arabidopsis
thaliana}
Length = 136
Score = 41.1 bits (92), Expect = 8e-04
Identities = 24/71 (33%), Positives = 40/71 (56%)
Frame = +3
Query: 231 YSGGPPLTLDLIKSRVLLVLQLYDKINPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFG 410
Y P T+D + + V L L + +++T + F LG DSLD VE++M +E+EFG
Sbjct: 51 YCAAKPETVDKVCAVVRKQLSLKEA---DEITAATKFAA-LGADSLDTVEIVMGLEEEFG 106
Query: 411 FEIPDGDAERL 443
E+ + A+ +
Sbjct: 107 IEMAEEKAQSI 117
>At1g54580.1 68414.m06225 acyl carrier protein, chloroplast,
putative / ACP, putative strong similarity to SP|P25701
Acyl carrier protein 2, chloroplast precursor (ACP)
{Arabidopsis thaliana}; contains InterPro accession
IPR003881: Isochorismatase
Length = 136
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/66 (34%), Positives = 39/66 (59%)
Frame = +3
Query: 246 PLTLDLIKSRVLLVLQLYDKINPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPD 425
P T+D + + V L L + +++T + F LG DSLD VE++M +E+EFG E+ +
Sbjct: 56 PETVDKVCAVVRKQLSLKEA---DEITAATKFAA-LGADSLDTVEIVMGLEEEFGIEMAE 111
Query: 426 GDAERL 443
A+ +
Sbjct: 112 EKAQSI 117
>At5g27200.1 68418.m03245 acyl carrier protein, chloroplast,
putative / ACP, putative similar to Acyl carrier
protein, chloroplast precursor (ACP) from {Arabidopsis
thaliana} SP|P11829, {Brassica napus} SP|P17650;
contains InterPro accession IPR003881: Isochorismatase
Length = 139
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/55 (30%), Positives = 33/55 (60%)
Frame = +3
Query: 315 EQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVRPKDIVQYIAD 479
+++T + F +LG DSLD VE++M +E+EFG + + A+ + + + I +
Sbjct: 79 QKVTAGTKF-TELGADSLDTVEIVMGLEEEFGITMAEERAKEIATVQQAAELIEE 132
>At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contains
Pfam domains PF00628: PHD-finger and PF00855: PWWP
domain; identical to cDNA trithorax 3 (ATX3) partial cds
GI:15217142
Length = 799
Score = 28.3 bits (60), Expect = 6.2
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Frame = +2
Query: 44 CCEYFSKCFRWSIAEINNV*NVRNMSSFDR---CVAAKVQHN*SRC----QN--IQKSGP 196
CC+ C W AE +N+ N R C KVQH + QN +K P
Sbjct: 368 CCD---GCDVWVHAECDNITNERFKELEHNNYYCPDCKVQHELTPTILEEQNSVFKKQSP 424
Query: 197 SEWERET 217
SEWER T
Sbjct: 425 SEWERHT 431
>At1g20730.1 68414.m02597 expressed protein contains TIGRFAM
TIGR01640 : F-box protein interaction domain
Length = 567
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 384 IMAMEDEFGFEIPDGDAERL 443
I+ ME +GFEI DGD+ RL
Sbjct: 348 ILEMETVYGFEISDGDSWRL 367
>At4g04670.1 68417.m00683 Met-10+ like family protein / kelch
repeat-containing protein contains Pfam profiles
PF01344: Kelch motif, PF02475: Met-10+ like-protein
Length = 995
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 369 DHVEVIMAMEDEFGFEIPDGDAERLVRPKDIVQYIAD 479
D VI+A+ E+P GD E+L+ + V+++ D
Sbjct: 152 DGKRVIIAIRCSIRMEVPIGDTEKLMVSPEYVKFLVD 188
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,997,299
Number of Sequences: 28952
Number of extensions: 318517
Number of successful extensions: 755
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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