Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0345
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    24   1.5  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    24   1.5  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    23   2.0  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    22   6.0  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   6.0  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   8.0  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 505 PSYLPRSHSWSPVSLL*RSCWPASTPRPVTKW 600
           PS  P   S  P+SL+ R C   +  +P   W
Sbjct: 218 PSQSPEPESVRPLSLVVRRCEEPTEEKPWRPW 249


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 512 TCQDLTPGRRYHCSEEAAG 568
           TC+D+    R HCS+  +G
Sbjct: 160 TCEDIGNSHRCHCSDGYSG 178


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 15  IGVAWAMPAAEQDSDPNILGSVLGVVKECVDGDVTL 122
           + +AW  P  +     + LGS+   VK+ V GD  L
Sbjct: 151 LDLAWEFPENKPKKIRSKLGSIWHSVKKTVAGDKVL 186


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 220 PGLPGPWSHCPRS 258
           PG PGP S  P S
Sbjct: 92  PGTPGPLSQAPAS 104


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 220 PGLPGPWSHCPRS 258
           PG PGP S  P S
Sbjct: 248 PGTPGPLSQAPAS 260


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 189 DGVTLDSKGSPRSARALEPLPEEPKAREAQVESRLV 296
           D  ++D++  PR+A   E L  EP     + E R++
Sbjct: 527 DSASVDTRLWPRAAALGEVLWSEPTNTWREAEQRIL 562


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,749
Number of Sequences: 336
Number of extensions: 2701
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)