Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0345
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0191 + 1478267-1478929,1480579-1480789,1482625-1482925,148... 31 0.74
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749... 31 0.74
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 31 0.98
01_06_1535 + 38057802-38057999,38058338-38058437,38058730-380588... 28 6.9
11_03_0125 - 10346779-10347282,10347613-10347771,10348063-10348212 28 9.1
08_02_1309 - 26029691-26030609,26030850-26030925,26032198-26032579 28 9.1
07_03_0132 - 14011468-14012124 28 9.1
05_05_0254 - 23638544-23640090,23640280-23640408,23640619-236406... 28 9.1
04_04_0369 - 24745140-24745510,24746005-24746089,24746746-247468... 28 9.1
>06_01_0191 +
1478267-1478929,1480579-1480789,1482625-1482925,
1483217-1483612,1483993-1484070,1484166-1484373
Length = 618
Score = 31.5 bits (68), Expect = 0.74
Identities = 23/50 (46%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = -1
Query: 657 PAPSRGRCLRSAPRGEDGRPLRNW--SRCACWPA-ASSEQ*YRRPGVRSW 517
P R RCL APRG PLR W SR A W A A E+ GV++W
Sbjct: 123 PPAERRRCLVPAPRGYRA-PLR-WPRSRDAAWYANAPHEELVTEKGVQNW 170
>02_05_1052 +
33770355-33773981,33774217-33774336,33774880-33774996,
33775322-33775411,33775971-33776078,33776304-33776351
Length = 1369
Score = 31.5 bits (68), Expect = 0.74
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Frame = +2
Query: 533 GRRYHCSEEAAGQQAHRDQLRSGRPSSPR----GALRKQRPRLGAGLSMTPKTWPTAP 694
GR + EAAG QA R Q RP++P G R P +P + P++P
Sbjct: 59 GRSSAAAAEAAGSQARRSQSTERRPATPSRLSPGGSRAAAPSSRISAPTSPSSAPSSP 116
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 31.1 bits (67), Expect = 0.98
Identities = 21/52 (40%), Positives = 27/52 (51%)
Frame = +3
Query: 201 LDSKGSPRSARALEPLPEEPKAREAQVESRLVDGVADFLENYVVQFKLPSSA 356
L KGSPRS + P P E +E+Q+ DG L++ VVQ PS A
Sbjct: 3519 LQDKGSPRSTQ--PPPPIESSEKESQIAE---DGQTVLLQSSVVQESTPSLA 3565
>01_06_1535 +
38057802-38057999,38058338-38058437,38058730-38058890,
38059166-38059363,38059442-38059534,38059732-38059854,
38060637-38060884,38061004-38061175,38061407-38061493,
38061523-38061786,38062415-38062577,38062839-38062926,
38063010-38063079,38063566-38063694,38063773-38063811,
38065539-38065760,38065935-38065999,38066095-38066288,
38066539-38066805,38066908-38066995,38067091-38067216,
38067291-38067400,38067523-38067671
Length = 1117
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 261 KAREAQVESRLVDGVADFLENYVVQFKLPSSAVEGMRRSLD 383
K RE+ ++ RL+ V DF E Y Q K +++ +D
Sbjct: 121 KGRESAMQERLLKEVGDFQERYCDQIKKIGELETQLKKEID 161
>11_03_0125 - 10346779-10347282,10347613-10347771,10348063-10348212
Length = 270
Score = 27.9 bits (59), Expect = 9.1
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Frame = +2
Query: 530 PGRRYHCS---EEAAGQQAHR--DQLRSGRPSSPRGALRKQRPRLGAG-LSMTP-KTWPT 688
PGRR+HC ++ A QQ+ Q+ S +PS P ++ + +L AG + P +T P
Sbjct: 88 PGRRFHCQDIPDDYAKQQSQLAIRQMSSAQPSEP---VQAEPTKLAAGEIEAVPEQTMPD 144
Query: 689 AP 694
P
Sbjct: 145 QP 146
>08_02_1309 - 26029691-26030609,26030850-26030925,26032198-26032579
Length = 458
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 533 GRRYHCSEEAAGQQAHRDQLRSGRPSSPRG 622
GRR E G+ A D R+GRP S RG
Sbjct: 411 GRRAREEREKVGKGAEGDSHRAGRPMSLRG 440
>07_03_0132 - 14011468-14012124
Length = 218
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +1
Query: 202 WTAKA-HPGLPGPWSHCPRSPRPGKHRSSLG 291
W A + G+PG W H PR G S+G
Sbjct: 176 WKAAGENAGVPGDWGHDPRGKLGGIEEESMG 206
>05_05_0254 - 23638544-23640090,23640280-23640408,23640619-23640626,
23641442-23642682
Length = 974
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 555 KKLLASKHTETSYEVVAHPHHEE--HYASSGHGWGQVYR*RPKHGLQRP 695
+ L ++ TSYEV HP EE ++ G +G+V R + Q P
Sbjct: 888 RMLFVARGCSTSYEVARHPGFEEGVYFLDDGRLYGEVAMFRDPNLRQYP 936
>04_04_0369 -
24745140-24745510,24746005-24746089,24746746-24746878,
24747764-24748584
Length = 469
Score = 27.9 bits (59), Expect = 9.1
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Frame = +3
Query: 129 KEKALRYVETLRSKREITLVDGVTLDSKGS--PRSARALEPLPEEPKAREAQVES--RLV 296
KE+ +RY+ L K + + TL ++ S R L + K R +E RL
Sbjct: 286 KERKMRYIAELERKVQTLQTEATTLSAQLSMLQRDTTGLTSENSDLKIRVQTMEQQVRLQ 345
Query: 297 DGVADFLENYVVQFKLPSSAV 359
D + D L + + Q K+ + V
Sbjct: 346 DALNDRLRDEIQQLKVATGQV 366
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,381,383
Number of Sequences: 37544
Number of extensions: 393259
Number of successful extensions: 1505
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1503
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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