Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0345
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)                    35   0.081
SB_59451| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.57 
SB_11780| Best HMM Match : UPF0058 (HMM E-Value=0.32)                  32   0.57 
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.00 
SB_33333| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_53385| Best HMM Match : DUF1388 (HMM E-Value=0.66)                  30   2.3  
SB_7681| Best HMM Match : Annexin (HMM E-Value=0)                      29   4.0  
SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)               29   5.3  
SB_20163| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_46990| Best HMM Match : Keratin_B2 (HMM E-Value=4.6)                28   9.3  
SB_41916| Best HMM Match : DUF164 (HMM E-Value=0.8)                    28   9.3  
SB_50147| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_45720| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_44603| Best HMM Match : Xan_ur_permease (HMM E-Value=0.00049)       28   9.3  

>SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)
          Length = 847

 Score = 34.7 bits (76), Expect = 0.081
 Identities = 27/94 (28%), Positives = 48/94 (51%)
 Frame = +3

Query: 105 DGDVTLCLKEKALRYVETLRSKREITLVDGVTLDSKGSPRSARALEPLPEEPKAREAQVE 284
           DG  T+ LKEK +  ++ L+ K E     GV+  S+ S   A+ LE L +E + +    +
Sbjct: 718 DGKRTIALKEKDIE-IQKLQEKLE-----GVSKASEQSKTHAQKLESLNKEQENKLVDAQ 771

Query: 285 SRLVDGVADFLENYVVQFKLPSSAVEGMRRSLDE 386
           SRL +  A+  +   +  KL    +E + + ++E
Sbjct: 772 SRLEESEAEGRKTAHL-LKLKEQKIESLEKKVEE 804


>SB_59451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 514

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 512 TCQDLTPGRRYHCSEEAAGQQAHRDQLRSGRPSSPRGA 625
           T +D+  G   H SE   G    RD++ SG+  S RG+
Sbjct: 186 TAEDIFVGSGNHASERTDGSSTKRDEIPSGKDHSGRGS 223


>SB_11780| Best HMM Match : UPF0058 (HMM E-Value=0.32)
          Length = 788

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = +3

Query: 135 KALRYVETLRSKREITLVDGVTLDSKGSPRSARALEPLPEEPKAREAQVESRLVDGVADF 314
           + LR  ++L    E  +   + ++ KG+  +A     L  +P+A E  ++ RL  G+   
Sbjct: 152 RVLRITDSLLHGEEEEMRGWLLVEQKGALGTATVTRSLDTDPQASELVIQVRLAGGIGVS 211

Query: 315 LENYV 329
           + NYV
Sbjct: 212 VVNYV 216


>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 2/87 (2%)
 Frame = +2

Query: 422 PSLGHR--QTKDHGPHPPILGYHRLRSRQSRRTCQDLTPGRRYHCSEEAAGQQAHRDQLR 595
           P  G+R  + + H P        R RSR  RR  +  +P RR      +   ++HR + R
Sbjct: 202 PRRGYRDQRRRSHSPAHHRRSRSRSRSRSPRRRRRSRSPRRRRRSRSPSPHHRSHRSRSR 261

Query: 596 SGRPSSPRGALRKQRPRLGAGLSMTPK 676
           S  P       R    R     S +P+
Sbjct: 262 SRSPRRRHSRSRSPTHRRHRSRSHSPE 288


>SB_33333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 583

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 476 GYHRLRSRQSRRTCQDLTPGRRYHCSEEAAGQQAHRDQLRSGR 604
           GY  ++ R  R  C  L PGR Y  +    GQ   R  + +GR
Sbjct: 515 GYVWIKKRDFRCRCPKLKPGRSYFIAGNLRGQSRKRSIVLNGR 557


>SB_53385| Best HMM Match : DUF1388 (HMM E-Value=0.66)
          Length = 264

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/74 (27%), Positives = 27/74 (36%)
 Frame = +2

Query: 422 PSLGHRQTKDHGPHPPILGYHRLRSRQSRRTCQDLTPGRRYHCSEEAAGQQAHRDQLRSG 601
           P   HR  + H P  P     + R ++  R  +   P   +   E    Q+ HR  L S 
Sbjct: 116 PQEPHRPQEPHRPLEPPRPQEQHRPQEPHRPLEPTRPQESHRPLEPPRPQEQHR-PLESH 174

Query: 602 RPSSPRGALRKQRP 643
           RP  P       RP
Sbjct: 175 RPLEPTRPQESHRP 188


>SB_7681| Best HMM Match : Annexin (HMM E-Value=0)
          Length = 426

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 20/70 (28%), Positives = 29/70 (41%)
 Frame = +2

Query: 398 EEEDQAAPPSLGHRQTKDHGPHPPILGYHRLRSRQSRRTCQDLTPGRRYHCSEEAAGQQA 577
           EEE++   P   H + ++ G HPP   +H    R +    QDL    R        GQ  
Sbjct: 309 EEEERGVHPPEQHHEEEERGVHPP-GEHHEEEERGAHPPGQDLEEEER---GAHPPGQD- 363

Query: 578 HRDQLRSGRP 607
           H ++ R   P
Sbjct: 364 HEEEERGAHP 373



 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 398 EEEDQAAPPSLGHRQTKDHGPHPP 469
           EEE++ A P   H + ++ G HPP
Sbjct: 365 EEEERGAHPPEQHHEEEERGVHPP 388


>SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)
          Length = 834

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -3

Query: 157 VSTYLKAFSLRHRVTSPSTHSLT--TPRTLPRMFGSESCSAA 38
           V  Y K+ S+RHR T    H+ T  +PR L   F    C+A+
Sbjct: 66  VKCYAKSASVRHRPTDRRQHAKTSPSPRKLSTHFTEIRCNAS 107


>SB_20163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = +1

Query: 502 KPSYLPRSHSWSPVS 546
           K ++LPRSH+W+P+S
Sbjct: 105 KETWLPRSHTWTPLS 119


>SB_46990| Best HMM Match : Keratin_B2 (HMM E-Value=4.6)
          Length = 782

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
 Frame = +3

Query: 42  AEQDSDPNILGSVLGVVKECVDGDV-TLCLKEKALRYVETLRSKREITL-VDGVTLDSKG 215
           AE  ++P  + SV G+  E  +G++ +LC ++ ALR        RE  +  DG  +D   
Sbjct: 102 AELPTEPPAIASVHGLDFEA-EGELRSLCQEKAALRATSAATKTREAKVREDGAAIDRAF 160

Query: 216 SPRSARALEPLPEEPKAREAQVES 287
           +  +    + LP++  A +   E+
Sbjct: 161 TDETGYDPQWLPDDHPAYQEYTEA 184


>SB_41916| Best HMM Match : DUF164 (HMM E-Value=0.8)
          Length = 391

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/24 (58%), Positives = 14/24 (58%)
 Frame = +1

Query: 223 GLPGPWSHCPRSPRPGKHRSSLGS 294
           GLP P S  P S RPG  RSS  S
Sbjct: 275 GLPAPPSPGPGSSRPGSSRSSRSS 298


>SB_50147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 739

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
 Frame = +2

Query: 425 SLGHRQTKDHGPHPPILGYHRLRSRQSRRTCQDLTPGRRYHCSEEAAGQ-QAHRDQLRSG 601
           +LG  Q +D GP PP+    R      R+    + P  +              R  L+ G
Sbjct: 469 NLGINQGEDEGPLPPVFPVFRFPGFAERKKRSLVEPEIKQKNKRSLESDISRKRRSLKEG 528

Query: 602 RPSSPRGALRKQRPRLGAGL 661
            PS  R  +R +R     GL
Sbjct: 529 PPSQYRTLIRDKRRLSDDGL 548


>SB_45720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 398 EEEDQAAPPSLGHRQTKDHGPHPP 469
           EEE++ A P   H + ++ G HPP
Sbjct: 128 EEEERGAHPPGQHHEEEERGAHPP 151


>SB_44603| Best HMM Match : Xan_ur_permease (HMM E-Value=0.00049)
          Length = 453

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 204 DSKGSPRSARALEPLPEEPKAREAQVESRLVDGVAD 311
           ++ G+   A  +EP+P+E    +A+VE   +DG  D
Sbjct: 376 NTDGATNVAIVMEPIPDEKHDGKAEVEGAKLDGKLD 411


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,099,745
Number of Sequences: 59808
Number of extensions: 407333
Number of successful extensions: 1435
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1429
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)