Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0343
         (580 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   1.1  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    24   1.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   1.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   5.7  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   7.6  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    21   7.6  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    21   7.6  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/39 (25%), Positives = 15/39 (38%)
 Frame = +2

Query: 20  RIRTSKCRFSQSYRHLIGHERQRSGGSNQLLLRATQRTC 136
           R+   KC F   Y+H + +  +   GS          TC
Sbjct: 230 RLTCPKCPFITEYKHHLEYHLRNHAGSKPFQCNKCDYTC 268


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 326 GWRSNGFTCICLCTIRSAKWKARLHVHSC 412
           G  SNG  C CL T  SAK + +    SC
Sbjct: 182 GKASNGNKCCCLRTCSSAK-RPKFENSSC 209


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 13/39 (33%), Positives = 15/39 (38%)
 Frame = +3

Query: 225 WATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRM 341
           WA G        V+   YS      V    DTSL  GR+
Sbjct: 479 WANGTLAKLSPKVLEPLYSGNLAVSVATPNDTSLVRGRL 517


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 15/47 (31%), Positives = 17/47 (36%)
 Frame = +1

Query: 49   TELSAPYWARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*T 189
            TE   P W      WW   T S   T      ++R   TR   TS T
Sbjct: 1028 TEHMHPDWTTKPSTWWSSTTTSPWWTTT---TTRRTTTTRPTTTSTT 1071


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 302 PCYSGHFTGWRSNGFTCIC 358
           PC +G     + N F CIC
Sbjct: 76  PCENGGTCVDKINAFQCIC 94


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 237 CQSPTNQQYFQR 202
           CQ+ +N +YFQR
Sbjct: 200 CQTVSNFEYFQR 211


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 237 CQSPTNQQYFQR 202
           CQ+ +N +YFQR
Sbjct: 126 CQTVSNFEYFQR 137


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,104
Number of Sequences: 336
Number of extensions: 3090
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14412858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)