Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0343
         (580 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23...   120   8e-28
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130...    48   4e-06
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124...    48   5e-06
08_02_1145 - 24674319-24674403,24674691-24674746,24674885-246749...    35   0.041
02_05_0540 + 29852109-29852195,29852304-29852477,29852585-298528...    29   2.0  
02_04_0414 - 22685981-22686178,22686374-22686465,22686580-226866...    29   2.7  
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741...    29   3.5  
11_01_0433 - 3323372-3324616,3324708-3324905                           28   4.7  
01_05_0108 + 18183250-18183336,18183451-18183962,18184074-181842...    28   4.7  
05_05_0039 - 21782093-21782320,21782383-21782754,21783031-217834...    28   6.2  
02_01_0706 + 5270233-5270326,5270767-5270914,5271018-5271089,527...    28   6.2  
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810...    28   6.2  

>05_01_0034 -
           228939-229028,229117-229230,229309-229430,229827-230056,
           230458-230537,230641-230859
          Length = 284

 Score =  120 bits (289), Expect = 8e-28
 Identities = 59/158 (37%), Positives = 90/158 (56%), Gaps = 1/158 (0%)
 Frame = +3

Query: 3   LFQIVDAYERRNADSHRVIGTLLGTS-DKGVVEVTNCFCVPHKEHADQVEAELNYAMDVY 179
           +F I D+Y RR   + RVIGTLLG+    G V V N + VPH E  DQV  ++ Y  ++Y
Sbjct: 26  VFNICDSYVRRPDQAERVIGTLLGSVLPDGTVHVRNSYVVPHNESPDQVALDIEYHHNMY 85

Query: 180 ELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYV 359
             + +VN  E IVGW++TG  V+  S++IH++YSRE + P+H+T+DT    G   ++AY+
Sbjct: 86  ASHHKVNPKEVIVGWFSTGFGVSGGSTLIHDFYSREVQSPIHLTVDTGFTRGDASIKAYI 145

Query: 360 CVPLGVPNGKQGCMFTPVDVTLTCYEPEIVGLQVCQKT 473
              L + +      F  + + L   E   VG  + + T
Sbjct: 146 SSNLSLGDRHLAAQFQEIPLDLRMLEAGKVGFDILKST 183


>04_04_1468 +
           33811471-33811657,33811888-33811980,33812899-33813027,
           33813089-33813166,33813377-33813435,33813522-33813644,
           33814225-33814282,33814383-33814468,33814564-33814635
          Length = 294

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
 Frame = +3

Query: 3   LFQIVDAYERRNADSH-RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE---AELNYAM 170
           L  IVD Y R   D+  RV+G LLGTS +G V+VTN + VP +E          + NY  
Sbjct: 24  LLSIVDHYNRVARDTRKRVVGVLLGTSSRGSVDVTNSYAVPFEEDDKDPRIWFLDHNYHE 83

Query: 171 DVYELNRRVNS 203
            ++ + +R+N+
Sbjct: 84  SMFSMFKRINA 94


>04_03_0650 -
           18411588-18411645,18412020-18412172,18412340-18412407,
           18412499-18412600,18412695-18412766,18412843-18412891,
           18412971-18413104,18413488-18413554,18414471-18414574,
           18414677-18414793,18415538-18415647,18415763-18415772
          Length = 347

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = +3

Query: 54  VIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNRRVNSSESIVGWW 227
           V G LLG     V+EVTNCF  P +E  ++ +A+  NY +++    R VN   + VGW+
Sbjct: 57  VTGQLLGLDVGSVLEVTNCFPFPMREDDEEADADGANYQLEMMRCLREVNVDNNTVGWY 115


>08_02_1145 -
           24674319-24674403,24674691-24674746,24674885-24674965,
           24675063-24675137,24675418-24675479,24675857-24675950,
           24676674-24676762,24676864-24677194
          Length = 290

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
 Frame = +3

Query: 51  RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAM--DVYELNRRVNSSESIVGW 224
           RV G ++G      VE+ N F +      D V   L+ A      EL ++V     ++GW
Sbjct: 68  RVFGCVIGVQRGRTVEIFNSFELV----LDPVSGTLDRAFLEKKQELYKKVFPDFYVLGW 123

Query: 225 WATGNEVTNHSSVIHEYYSRECREPVHVTLDTSL 326
           ++TG++V +    IH+        PV++ L+ ++
Sbjct: 124 YSTGSDVRDTDMQIHKALMDINESPVYLLLNPAI 157


>02_05_0540 +
           29852109-29852195,29852304-29852477,29852585-29852841,
           29852954-29853125,29853513-29853551,29853647-29853715,
           29853795-29853911,29854190-29854401,29854578-29854736,
           29854810-29855009,29855100-29855266,29855346-29855442,
           29855560-29855651,29855861-29856139
          Length = 706

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 257 GVVGYFIASRPPTNNTFRGIDSSVQLVNIHRVIKF 153
           G V + +AS+PP    FR +++  Q+V I + +KF
Sbjct: 442 GSVNWKLASKPPIKLPFRKLENCNQVVKIGKELKF 476


>02_04_0414 -
           22685981-22686178,22686374-22686465,22686580-22686676,
           22686801-22686916,22687314-22687513,22687588-22687740,
           22687960-22688171,22688403-22688519,22688613-22688687,
           22688815-22688853,22689518-22689689,22689809-22690056,
           22690151-22690324,22690418-22690504
          Length = 659

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 257 GVVGYFIASRPPTNNTFRGIDSSVQLVNIHRVIKF 153
           G+V +  AS+PP    FR +++  Q++ I + +KF
Sbjct: 439 GIVNWKQASKPPIIMPFRKVENGNQVIEIGKELKF 473


>07_03_1709 -
           28873172-28873327,28873519-28873584,28874067-28874127,
           28875406-28875462,28876301-28876531,28876685-28876799,
           28876897-28877136,28877222-28877316,28877406-28877585,
           28877663-28877839,28877920-28878890
          Length = 782

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 394 PCFPFGTPNGTQTYARKPIRPPASEVSRVTWTG 296
           P  PF +P  +  +AR P  P  +E+S    TG
Sbjct: 599 PDSPFASPTKSAGFARDPFAPTEAEISATASTG 631


>11_01_0433 - 3323372-3324616,3324708-3324905
          Length = 480

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 197 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVG 102
           D++V L+ IH+ I F F    ++FVW  +A+G
Sbjct: 321 DAAVVLMLIHQFITFGFACTPLYFVWE-KAIG 351


>01_05_0108 +
           18183250-18183336,18183451-18183962,18184074-18184245,
           18184984-18185022,18185117-18185185,18185281-18185397,
           18185842-18186056,18187085-18187240,18187328-18187527,
           18187927-18188084,18188321-18188417,18188738-18188829,
           18189018-18189191
          Length = 695

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 257 GVVGYFIASRPPTNNTFRGIDSSVQLVNIHRVIKF 153
           G V + +A+RPP    FR +++  Q++ I + +KF
Sbjct: 469 GSVNWKMANRPPIKLPFRKVENCNQVLKIGKELKF 503


>05_05_0039 -
           21782093-21782320,21782383-21782754,21783031-21783496,
           21784896-21784993,21785179-21785362,21785462-21785574,
           21785942-21786127,21786191-21786364
          Length = 606

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 197 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVG 102
           D++V L+ IH+ I F F    ++FVW  +A+G
Sbjct: 311 DAAVILMLIHQFITFGFACTPLYFVWE-KAIG 341


>02_01_0706 +
           5270233-5270326,5270767-5270914,5271018-5271089,
           5271153-5271263,5271363-5271434,5271533-5271604,
           5272126-5272197,5272281-5272346,5272426-5272491,
           5272601-5272971,5273203-5273456,5273886-5274157,
           5274333-5274474,5275174-5275313,5275381-5275537,
           5275797-5275965,5276048-5276088
          Length = 772

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +3

Query: 165 AMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTS--LAGGR 338
           A+ ++EL R ++S   + GW + G +          ++   CR+   V L+ S    GG 
Sbjct: 32  ALGLWELYRTLDSPWQLSGWTSQGGDPCGRGGEQRPWHGVLCRDSSIVALNISGLGVGGW 91

Query: 339 MGL 347
           +GL
Sbjct: 92  LGL 94


>01_05_0320 -
           20874691-20875230,20879337-20879590,20880014-20881087,
           20881259-20881511,20881548-20882369
          Length = 980

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 73  ARATKEWWK*PTASACHTKN-MPIKSK 150
           A  +KEWW     +ACH  N +P+K K
Sbjct: 508 AGLSKEWWGEAVLTACHVLNKIPMKHK 534


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,366,414
Number of Sequences: 37544
Number of extensions: 336011
Number of successful extensions: 874
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)