Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0343
         (580 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   2e-05
SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)               44   9e-05
SB_36852| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.055
SB_29584| Best HMM Match : DUF1106 (HMM E-Value=8.6)                   29   2.7  
SB_47404| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_4183| Best HMM Match : APH_6_hur (HMM E-Value=7.4)                  28   4.8  
SB_32431| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_32430| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +3

Query: 3   LFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVP-HKEHADQVEAELNYAMDVY 179
           + +I+   E   +    V G LLG      +E+TNCF  P +K   D+ + ++NY M+V 
Sbjct: 25  VLKIIKHCEEEGSSGDLVQGVLLGLIQDNRLEITNCFPFPSNKAGDDEDDDDVNYQMEVM 84

Query: 180 ELNRRVNSSESIVGWW 227
              R VN     VGW+
Sbjct: 85  RRLRAVNIDHLHVGWY 100


>SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
 Frame = +3

Query: 3   LFQIVDAYERRN--ADSHRVIGTLLGTSDKGVVEVTNCFCVPHKE-HADQVE--AELNYA 167
           L  +VD + R        RV+G LLG+  KGV++V NCF VP  E   DQ     + +Y 
Sbjct: 18  LLSVVDHFNRMGKVGSQKRVVGVLLGSRRKGVLDVANCFAVPFDEDDRDQNVWFLDHDYL 77

Query: 168 MDVYELNRRVN 200
            ++Y + ++VN
Sbjct: 78  ENMYAMFKKVN 88


>SB_36852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 34.7 bits (76), Expect = 0.055
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 360 CVPLGVPNGKQGCMFTPVDVTLTCYEPEIVGLQVCQKT 473
           CV +GVP   +G MF+ +   +    PE VG+ V Q+T
Sbjct: 27  CVKMGVPGKTEGTMFSQIPCEVKLTGPEKVGVDVLQRT 64



 Score = 31.5 bits (68), Expect = 0.51
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 144 VEAELNYAMDVYELNRRVNSSESIVG 221
           V  EL YA  +YEL+++ N +E IVG
Sbjct: 1   VAVELEYAKSMYELSQKANPNEQIVG 26


>SB_29584| Best HMM Match : DUF1106 (HMM E-Value=8.6)
          Length = 219

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 20/71 (28%), Positives = 33/71 (46%)
 Frame = -2

Query: 213 YFQRN*LFCSARKHPSRN*VPLRLDRHVLCVARRSSWLLPPLLCRSCPIRCR*LCENLHF 34
           Y+    + CS  + PSR  +P R  R +   +R+  W++   +CR  P R   L   ++F
Sbjct: 36  YYNYRHVRCSRSREPSR--IPKRFLRRIHNKSRKLRWVVYHRICRKIP-RSSNLHNYINF 92

Query: 33  DVRMRPQFEIK 1
               R  F+ K
Sbjct: 93  GRLRRRYFDSK 103


>SB_47404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = -2

Query: 213 YFQRN*LFCSARKHPSRN*VPLRLDRHVLCVARRSSWLLPPLLCRSCPIRCR*LCENLHF 34
           Y+    + CS  + PSR  +P R  R +   +R+  W++   +CR+ P R   L   ++F
Sbjct: 90  YYNYRHVRCSRSREPSR--IPKRFLRRLHNKSRKLRWVVYHRICRNIP-RSSNLHNYINF 146

Query: 33  D-VRMRP 16
             +R RP
Sbjct: 147 GRLRRRP 153


>SB_4183| Best HMM Match : APH_6_hur (HMM E-Value=7.4)
          Length = 270

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 308 YSGHFTGWRSNGFTCICL 361
           ++GH   W SNG TC+ L
Sbjct: 201 FNGHTYSWHSNGVTCVLL 218


>SB_32431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 299 CPCYSGHFTGWRSNGFTCIC 358
           CPC +G     + +GFTCIC
Sbjct: 130 CPCKNGGHCVNKVDGFTCIC 149


>SB_32430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 299 CPCYSGHFTGWRSNGFTCIC 358
           CPC +G     + +GFTCIC
Sbjct: 130 CPCKNGGHCVNKVDGFTCIC 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,689,690
Number of Sequences: 59808
Number of extensions: 395867
Number of successful extensions: 1437
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1436
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)