Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0343
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...    90   9e-19
Z68760-4|CAE17822.1|  160|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu...    28   5.5  
Z70286-2|CAA94290.1|  529|Caenorhabditis elegans Hypothetical pr...    27   7.3  
U49795-1|AAB03859.1|  673|Caenorhabditis elegans DNA-binding pro...    27   7.3  
U49794-1|AAB03858.1|  673|Caenorhabditis elegans lag-1 protein.        27   7.3  
AJ582071-1|CAE46541.1|  529|Caenorhabditis elegans flavin monoox...    27   7.3  
AF100663-8|AAM98006.1|  671|Caenorhabditis elegans Lin-12 and gl...    27   7.3  
AF100663-7|AAC68978.3|  673|Caenorhabditis elegans Lin-12 and gl...    27   7.3  
AF067617-4|AAC17557.1|  381|Caenorhabditis elegans Hypothetical ...    27   7.3  
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score = 90.2 bits (214), Expect = 9e-19
 Identities = 49/160 (30%), Positives = 86/160 (53%), Gaps = 14/160 (8%)
 Frame = +3

Query: 33  RNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNRRVNSSES 212
           +N    + +GTL+G  +KG ++VTNCF +P  E  D +E +  +   +    ++ + +E 
Sbjct: 30  KNTGQEKCMGTLMGYYEKGSIQVTNCFAIPFNESNDDLEIDDQFNQQMISALKKTSPNEQ 89

Query: 213 IVGWWATGNEVTNHSSVIHEYYSRECRE--------PVHV-TLDTSLAGG---RMGLRAY 356
            VGW+ T +++T+   + H+YY R   E        P+ V T+DT+ +G    RM +RAY
Sbjct: 90  PVGWFLTTSDITSSCLIYHDYYVRVITEASARRESPPIVVLTIDTTFSGDMSKRMPVRAY 149

Query: 357 VCVPLGVPN--GKQGCMFTPVDVTLTCYEPEIVGLQVCQK 470
           +    G+P   G    +F P+ V L  +  E+V +Q+ +K
Sbjct: 150 LRSKAGIPGAAGPHCAIFNPLRVELAAFPGELVAMQLIEK 189


>Z68760-4|CAE17822.1|  160|Caenorhabditis elegans Hypothetical
           protein F36H1.9 protein.
          Length = 160

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 106 TASACHTKNMPIKSKRNLITRWMFTS 183
           T  ACHT  M +  K+N IT W +++
Sbjct: 55  TLVACHTLQMFLAEKKNTITHWKYST 80


>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
            (myotubularin) family protein 5 protein.
          Length = 1744

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 356  CLCTIRSAKWKARLHVHSCRCHSH 427
            C CT    +W   +H   CR H H
Sbjct: 1556 CYCTNILTRWSKAVHCKKCRIHVH 1579


>Z70286-2|CAA94290.1|  529|Caenorhabditis elegans Hypothetical
           protein K08C7.5 protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 147 RLDRHVLCVARRSSWLLPPLLCRSCP 70
           R+ + V  V RR +WL+P L  R  P
Sbjct: 205 RIAKQVYLVTRRGTWLIPKLETRGLP 230


>U49795-1|AAB03859.1|  673|Caenorhabditis elegans DNA-binding
           protein LAG-1 protein.
          Length = 673

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +1

Query: 70  WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 222
           W  AT       +  + H    P+   RN  T WMFT+ T   + + + LV
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 643


>U49794-1|AAB03858.1|  673|Caenorhabditis elegans lag-1 protein.
          Length = 673

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +1

Query: 70  WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 222
           W  AT       +  + H    P+   RN  T WMFT+ T   + + + LV
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 643


>AJ582071-1|CAE46541.1|  529|Caenorhabditis elegans flavin
           monooxygenase protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 147 RLDRHVLCVARRSSWLLPPLLCRSCP 70
           R+ + V  V RR +WL+P L  R  P
Sbjct: 205 RIAKQVYLVTRRGTWLIPKLETRGLP 230


>AF100663-8|AAM98006.1|  671|Caenorhabditis elegans Lin-12 and glp-1
           phenotype protein1, isoform b protein.
          Length = 671

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +1

Query: 70  WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 222
           W  AT       +  + H    P+   RN  T WMFT+ T   + + + LV
Sbjct: 591 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 641


>AF100663-7|AAC68978.3|  673|Caenorhabditis elegans Lin-12 and glp-1
           phenotype protein1, isoform a protein.
          Length = 673

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +1

Query: 70  WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 222
           W  AT       +  + H    P+   RN  T WMFT+ T   + + + LV
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 643


>AF067617-4|AAC17557.1|  381|Caenorhabditis elegans Hypothetical
           protein T04D1.2 protein.
          Length = 381

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 1   FYFKLWTHTNVEMQILTELSAPYWARA 81
           FY  +W+ T V  + LT     YW R+
Sbjct: 118 FYDMMWSQTTVSYRFLTTPPVTYWIRS 144


>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical protein
            C23F12.1b protein.
          Length = 2747

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +2

Query: 308  YSGHFTGWRSNGFTCICLCTIRSAKWKARLHVHSCRCHSHVL*T*DCRSASVPEDC 475
            YS HF  ++    +C+C C +    +  ++HV      SH++   D +   +P  C
Sbjct: 1976 YSNHFQIFQIR--SCLCACFVLFIFFNFKIHVIFTTLSSHLISFIDPKGGPLPVRC 2029


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,828,160
Number of Sequences: 27780
Number of extensions: 282033
Number of successful extensions: 663
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)