Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0343
(580 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g39990.1 68415.m04914 eukaryotic translation initiation facto... 119 1e-27
At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su... 81 5e-16
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su... 80 9e-16
At1g10840.1 68414.m01246 eukaryotic translation initiation facto... 49 3e-06
At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subuni... 38 0.006
At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subuni... 36 0.020
At5g01240.2 68418.m00032 amino acid permease, putative strong si... 30 0.97
At5g01240.1 68418.m00031 amino acid permease, putative strong si... 30 0.97
At5g48460.1 68418.m05992 fimbrin-like protein, putative strong s... 29 2.2
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 28 5.2
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 28 5.2
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 28 5.2
>At2g39990.1 68415.m04914 eukaryotic translation initiation factor 3
subunit 5 / eIF-3 epsilon / eIF3f (TIF3F1) identical to
SP|O04202 Eukaryotic translation initiation factor 3
subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 293
Score = 119 bits (287), Expect = 1e-27
Identities = 58/158 (36%), Positives = 93/158 (58%), Gaps = 1/158 (0%)
Frame = +3
Query: 3 LFQIVDAYERRNADSHRVIGTLLGTS-DKGVVEVTNCFCVPHKEHADQVEAELNYAMDVY 179
+F + D + RR + RVIGTLLG+ G V++ N + VPH E +DQV +++Y ++
Sbjct: 35 IFNVCDCFVRRPDSAERVIGTLLGSILPDGTVDIRNSYAVPHNESSDQVAVDIDYHHNML 94
Query: 180 ELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYV 359
+ +VNS E+IVGW++TG V SS+IH++Y+RE P+H+T+DT G ++A+V
Sbjct: 95 ASHLKVNSKETIVGWYSTGAGVNGGSSLIHDFYAREVPNPIHLTVDTGFTNGEGTIKAFV 154
Query: 360 CVPLGVPNGKQGCMFTPVDVTLTCYEPEIVGLQVCQKT 473
L + + + F + V L + E VG V + T
Sbjct: 155 SSNLSLGDRQLVAHFQEIPVDLRMVDAERVGFDVLKAT 192
>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26s proteasome regulatory subunit s12
(proteasome subunit p40) (mov34 protein) SP:P26516 from
[Mus musculus]; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 308
Score = 81.0 bits (191), Expect = 5e-16
Identities = 49/158 (31%), Positives = 80/158 (50%), Gaps = 6/158 (3%)
Frame = +3
Query: 3 LFQIVDAYERRNADSH-RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEA---ELNYAM 170
L IVD Y R DS RV+G LLG+S +GVV+VTN + VP +E + NY
Sbjct: 24 LLSIVDHYNRVAKDSSKRVVGVLLGSSSRGVVDVTNSYAVPFEEDDKDPSIWFLDHNYHE 83
Query: 171 DVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLR 350
++ + +R+N+ E +VGW++TG ++ + +H ++ PV V +D + +
Sbjct: 84 SMFHMFKRINAKEHVVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPKELGIPTK 143
Query: 351 AYVCVPLGVPNGKQGC--MFTPVDVTLTCYEPEIVGLQ 458
AY V N Q +F V + +E E +G++
Sbjct: 144 AYYAVEEVKENATQKSQKVFVHVSTEIAAHEVEEIGVE 181
>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26S proteasome regulatory subunit S12
(MOV34) SP:P26516 from [Mus musculus]
Length = 310
Score = 80.2 bits (189), Expect = 9e-16
Identities = 49/158 (31%), Positives = 79/158 (50%), Gaps = 6/158 (3%)
Frame = +3
Query: 3 LFQIVDAYERRNAD-SHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEA---ELNYAM 170
L IVD Y R D S RV+G LLG+S +G V+VTN + VP +E + NY
Sbjct: 24 LLSIVDHYNRVAKDTSKRVVGVLLGSSSRGTVDVTNSYAVPFEEDDKDTSIWFLDHNYHE 83
Query: 171 DVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLR 350
++ + +R+N+ E IVGW++TG ++ + +H ++ PV V +D + +
Sbjct: 84 SMFHMFKRINAKEHIVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPKELGIPTK 143
Query: 351 AYVCVPLGVPNGKQGC--MFTPVDVTLTCYEPEIVGLQ 458
AY V N Q +F V + +E E +G++
Sbjct: 144 AYYAVEEVKENATQKSQQVFVHVPTEIAAHEVEEIGVE 181
>At1g10840.1 68414.m01246 eukaryotic translation initiation factor 3
subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to
SP|Q9C5Z2 Eukaryotic translation initiation factor 3
subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 337
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +3
Query: 54 VIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNRRVNSSESIVGWW 227
V G LLG V+EVTNCF P ++ +++EA+ NY +++ R VN + VGW+
Sbjct: 47 VTGQLLGLDVGSVLEVTNCFPFPVRDDDEEIEADGANYQLEMMRCLREVNVDNNTVGWY 105
>At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6B) identical to COP9 signalosome subunit 6
[Arabidopsis thaliana] GI:17940314, CSN complex subunit
6B [Arabidopsis thaliana] GI:18056667; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; supporting cDNA
gi|17940313|gb|AF434762.1|AF434762; identical to cDNA
CSN complex subunit 6B (CSN6B) GI:18056666
Length = 317
Score = 37.5 bits (83), Expect = 0.006
Identities = 23/92 (25%), Positives = 44/92 (47%)
Frame = +3
Query: 51 RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNRRVNSSESIVGWWA 230
RV G ++G VE+ N F + D ++ ++ EL ++V ++GW++
Sbjct: 57 RVYGCVIGLQRGRTVEIFNSFELIFDPALDTLDR--SFLEKKQELYKKVFPDFYVLGWYS 114
Query: 231 TGNEVTNHSSVIHEYYSRECREPVHVTLDTSL 326
TG++ T IH+ PV+V L+ ++
Sbjct: 115 TGSDATESDMHIHKALMDINESPVYVLLNPAI 146
>At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6A) identical to CSN complex subunit 6A [Arabidopsis
thaliana] GI:18056665, COP9 complex subunit 6
[Arabidopsis thaliana] GI:15809663; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; identical to
cDNA CSN complex subunit 6A (CSN6A) GI:18056664
Length = 317
Score = 35.9 bits (79), Expect = 0.020
Identities = 30/136 (22%), Positives = 58/136 (42%), Gaps = 1/136 (0%)
Frame = +3
Query: 51 RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNRRVNSSESIVGWWA 230
RV G ++G VE+ N F + + ++ ++ EL ++V I+GW++
Sbjct: 57 RVYGCVIGVQRGRTVEIFNSFELLYDPSTQTLDR--SFLEKKQELYKKVFPDFYILGWYS 114
Query: 231 TGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVC-VPLGVPNGKQGCMFT 407
TG++ IH+ PV+V L+ ++ + L + L V +G +F
Sbjct: 115 TGSDAEESDMHIHKALMDINESPVYVLLNPAINHTQKDLPVTIYESELHVIDGIPQLIFA 174
Query: 408 PVDVTLTCYEPEIVGL 455
T+ E E + +
Sbjct: 175 HTSYTIETVEAERISV 190
>At5g01240.2 68418.m00032 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 408
Score = 30.3 bits (65), Expect = 0.97
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 197 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 93
D++V L+ IH+ I F F ++FVW +A+G H
Sbjct: 238 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 271
>At5g01240.1 68418.m00031 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 488
Score = 30.3 bits (65), Expect = 0.97
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 197 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 93
D++V L+ IH+ I F F ++FVW +A+G H
Sbjct: 318 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 351
>At5g48460.1 68418.m05992 fimbrin-like protein, putative strong
similarity to fimbrin-like protein AtFim2 [Arabidopsis
thaliana] GI:2737926; contains Pfam profile PF00307:
Calponin homology (CH) domain
Length = 654
Score = 29.1 bits (62), Expect = 2.2
Identities = 10/35 (28%), Positives = 23/35 (65%)
Frame = -3
Query: 257 GVVGYFIASRPPTNNTFRGIDSSVQLVNIHRVIKF 153
G+V + ++S+PP F+ +++ Q+V + + +KF
Sbjct: 436 GIVNWKVSSKPPIKLPFKKVENCNQVVKLGKQLKF 470
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 265 YTSITPVNAVSLSMLL 312
YT++ PVNAVSLS LL
Sbjct: 231 YTTVVPVNAVSLSPLL 246
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 265 YTSITPVNAVSLSMLL 312
YT++ PVNAVSLS LL
Sbjct: 231 YTTVVPVNAVSLSPLL 246
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 265 YTSITPVNAVSLSMLL 312
YT++ PVNAVSLS LL
Sbjct: 231 YTTVVPVNAVSLSPLL 246
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,044,958
Number of Sequences: 28952
Number of extensions: 259505
Number of successful extensions: 659
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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