Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0341
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    33   0.033
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    28   1.6  
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    27   2.9  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    27   2.9  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    27   3.8  
SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc2...    27   3.8  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    26   5.0  
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c...    26   5.0  
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    26   6.6  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    26   6.6  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    25   8.7  

>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 33.5 bits (73), Expect = 0.033
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
 Frame = +1

Query: 481 YNSHAAIQDYLDTVAKRHPDLVRLQVLGTSYQGRVMRLVKISTNPSAGN-------PIIF 639
           Y +  +I  +L  +A  + DL  L  +G + +GR +  +K++    + N        +I 
Sbjct: 183 YQNLESINSWLRLMASLYKDLSELVPVGITAEGRTILGLKLNGRHPSDNGEKIRNKKVII 242

Query: 640 IDAGIHARXWVAPAMALYVIHRLI 711
           I  G HAR W+      Y   +L+
Sbjct: 243 IQGGSHAREWIGIPSVCYAAWQLL 266


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 135 NPRHYFSNNYHKYNTIRKYDFKQLKWLLYVKGMFG 31
           N  H F N+Y   N +R Y++   K  +Y+  +FG
Sbjct: 285 NYHHAFPNDYR--NGLRWYEYDPTKIFIYIASLFG 317


>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = +1

Query: 139 LVLSFLGLWSNVRCDVNKYENYTLIRLFPETTSQLENITRFEDVDNQVEI 288
           L LS  GL+S+  C     E Y LIR        +E+   F DVDN  ++
Sbjct: 265 LYLSIKGLFSSSTC----LELYELIRNISWNFIGVESFNSFRDVDNSSQL 310


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 546 SSPSPGYQLPRQSDEARENI 605
           +SPSPG+ LP   DE  +N+
Sbjct: 524 ASPSPGWSLPTNVDEDYDNV 543


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/45 (20%), Positives = 25/45 (55%)
 Frame = +1

Query: 310 NDSLDLIVPPNKLDYVQSYAQNTNLTYEIKRRNYGRSFESPERVP 444
           ++S   ++ PN + YV+   Q  ++ Y + +  Y  + ++ +++P
Sbjct: 338 SNSHSFVISPNDIVYVRERNQIDHVKYLVSKEMYAEAIDAVKKLP 382


>SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
 Frame = +1

Query: 307 INDSLDLIVPPNKLDYVQSYAQNTNLTY-----EIKRRNYGRSFESPERVPRRRLLRGLN 471
           I+ S DL+   NKL+  + Y  +T L Y      I   N    F S  ++P  R + G  
Sbjct: 103 IDLSKDLVDWDNKLNADERYFISTVLAYFAASDGIVNENLLERFSSEVQIPEARCVYGFQ 162

Query: 472 VFEYNSHAAIQDYLDTVAKRHP 537
           +   N H+     L     R P
Sbjct: 163 IMIENIHSETYSLLLDTYIREP 184


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
 Frame = +1

Query: 229  TTSQLENITRFEDVDNQVEILKQSRGINDSLDLIVPPNKLDYVQ----SYAQNTNLTYE- 393
            T   L    +FE    +V   + + GINDS    +     DYV      Y++N     E 
Sbjct: 884  TCEHLLEHKQFESTLKKVATFRNAEGINDSGSFTLKDEYFDYVDPFNIHYSRNQREEAEN 943

Query: 394  IKRRNYGR 417
            I RR Y +
Sbjct: 944  ILRRRYSK 951


>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 493 HASYIRKR*VHEVVSFLELVLVTQKIFH 410
           H S IR+R + +V S  E+  VTQ +FH
Sbjct: 135 HTSAIRER-IDQVASLQEVESVTQALFH 161


>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 184 VNKYENYTLIRLFPETTSQLENITRF 261
           +NKY   T + L P+TT Q+  I ++
Sbjct: 90  MNKYRGKTQLALKPKTTQQVSEILKY 115


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 220 FPETTSQLENITRFEDVDNQVEILKQSRGINDSLDL 327
           F E  +Q     R ED+  ++ +     GI D LD+
Sbjct: 194 FIEEANQARRQARLEDLKKRIALHSHKAGIEDELDI 229


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 361 SYAQNTNLTYEIKRRNYGRSFESPERV 441
           SY++N    +E+K  +    FESP++V
Sbjct: 157 SYSENPFYLFEVKNLSISFHFESPQQV 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,321,473
Number of Sequences: 5004
Number of extensions: 72702
Number of successful extensions: 211
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)