Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0341
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0006 - 9496990-9497592,9497695-9497802,9497884-9497997,949...    32   0.56 
09_01_0033 + 546670-546885,547497-547637,548025-548291                 29   3.9  
06_03_1013 - 26896690-26896818,26897051-26897089,26897178-268973...    29   5.2  
01_01_0450 - 3344203-3344259,3344339-3344506,3344743-3344956,334...    29   5.2  
06_03_0084 - 16386962-16387033,16387124-16387175,16387252-163873...    28   6.9  

>10_06_0006 -
           9496990-9497592,9497695-9497802,9497884-9497997,
           9498170-9498219,9498346-9498434,9498542-9498738,
           9498877-9499038,9499337-9499455,9499579-9499666,
           9499744-9499849,9499968-9500056,9500167-9500319,
           9500434-9500526,9500625-9500691,9500811-9500923,
           9501544-9501639,9501782-9501961
          Length = 808

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 358 QSYAQNTNLTYEIKRRNYGRSFE 426
           Q Y+ N N T+++K  NYG SFE
Sbjct: 519 QQYSPNENFTFQLKSPNYGGSFE 541


>09_01_0033 + 546670-546885,547497-547637,548025-548291
          Length = 207

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +2

Query: 419 LLSHQNEFQEGDYFVDSTFSNITRMPLSKTIWTQWQKDTRISFVSKSWVPATKAE 583
           +LSH      GD   D  F  I R P+S T  ++   D ++  V+ S  P+T+ E
Sbjct: 49  MLSHFPGANIGD--TDGLFPQIVRYPISSTPISKLMNDLKLMAVTFSRQPSTRVE 101


>06_03_1013 -
           26896690-26896818,26897051-26897089,26897178-26897300,
           26897822-26897902,26898048-26898138,26898325-26898396,
           26898474-26898574,26899211-26899309,26899942-26900286
          Length = 359

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = +1

Query: 265 DVDNQVEILKQSRGINDSLDLIVPPNKLDYVQSYAQNTNLTYEIKRRN---YGRSFESPE 435
           DVDNQ  +L     ++DS    VP +  DYV +Y   TN+++    R+   +G    SPE
Sbjct: 170 DVDNQFFVL-----LSDSC---VPLHTFDYVYNYLMGTNISFIDCFRDPGPHGNGRYSPE 221

Query: 436 RVP 444
            +P
Sbjct: 222 MLP 224


>01_01_0450 -
           3344203-3344259,3344339-3344506,3344743-3344956,
           3345039-3345101,3345582-3345769,3345846-3346029,
           3346535-3346606,3346676-3346787,3346878-3346953,
           3347050-3347100,3347179-3347260,3347331-3347567,
           3347650-3347772,3348141-3348326,3348680-3349625,
           3350426-3350551,3350683-3350811,3350918-3351049,
           3351167-3351301,3351450-3351575,3352080-3352148,
           3352149-3352205,3352302-3352436,3352600-3352704,
           3352841-3352906,3353333-3353503,3353806-3353983
          Length = 1395

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 349 DYVQSYAQNTNLTYEIKRRNYGRSFESPERVPR-RRLLRGLNVFEYNSHAAIQDYLDTV 522
           +Y+ +++ NT+     KRR  GR+  SP + PR  R      +  YNS    +D  D V
Sbjct: 757 NYIDTHSVNTDYLAGEKRRFGGRNSISPFKRPRSSRCTIFFTLLTYNSCDQTEDVTDEV 815


>06_03_0084 -
           16386962-16387033,16387124-16387175,16387252-16387313,
           16387509-16387543,16387637-16387679,16388610-16388692,
           16388829-16388917,16390415-16390681,16391370-16391446,
           16391546-16391677,16391802-16391870,16392464-16392529,
           16392603-16392773,16392848-16392916,16393005-16393086,
           16393175-16393219,16393535-16393659,16394271-16394525,
           16396561-16396722
          Length = 651

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 391 HKSNSCFGHSFERSRAYLAGL*DLSCH*FLCFALI 287
           HKS +C G S ERS +  + L +   H FL  +LI
Sbjct: 456 HKSANCNGESLERSASVPSNLVNSGSHKFLSGSLI 490


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,607,986
Number of Sequences: 37544
Number of extensions: 428558
Number of successful extensions: 1157
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)