Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0341
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15763| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_37943| Best HMM Match : Peptidase_M14 (HMM E-Value=0)               49   5e-06
SB_9115| Best HMM Match : No HMM Matches (HMM E-Value=.)               42   5e-04
SB_24088| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.003
SB_1170| Best HMM Match : No HMM Matches (HMM E-Value=.)               40   0.003
SB_23383| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.004
SB_44286| Best HMM Match : Peptidase_M14 (HMM E-Value=2.9e-08)         38   0.007
SB_49771| Best HMM Match : Peptidase_M14 (HMM E-Value=1.1e-34)         38   0.009
SB_34368| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.035
SB_808| Best HMM Match : ZZ (HMM E-Value=2.9e-05)                      31   1.00 
SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_3254| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_42416| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28)                  28   7.0  

>SB_15763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 19/56 (33%), Positives = 33/56 (58%)
 Frame = +1

Query: 544 VRLQVLGTSYQGRVMRLVKISTNPSAGNPIIFIDAGIHARXWVAPAMALYVIHRLI 711
           V +  +G++Y+GR    ++I        P+ F++ GIHAR W+ PA  +Y+I + I
Sbjct: 110 VTMNTVGSTYEGRQQYYMEIKGRSLPEKPVFFMNCGIHAREWITPATCMYIITQFI 165


>SB_37943| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
          Length = 249

 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 19/41 (46%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
 Frame = +1

Query: 619 AGNPIIFIDAGIHARXWVAPAMALYVIHRLIN--DPEAKTT 735
           A  P+ F++ GIHAR WV+PA  +Y+IH L++  + +AK T
Sbjct: 67  ADKPVFFVNCGIHAREWVSPATCMYIIHELVSKYEKDAKVT 107


>SB_9115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
 Frame = +1

Query: 511 LDTVAKRHPDLVRLQVLGTSYQGRVMRLVKISTNPS---AGNPIIFIDAGIHARXWVAPA 681
           +D++A++ P++ R+  +G SYQG+ +R+++I+ NP     G P     A +H    V   
Sbjct: 11  IDSLAEKFPNITRVYTIGRSYQGKSLRVIEITKNPGKHIPGKPEFKYIANMHGNEVVGRE 70

Query: 682 MALYVIHRL 708
           + L +   L
Sbjct: 71  LLLLLAEHL 79


>SB_24088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 13/29 (44%), Positives = 22/29 (75%)
 Frame = +1

Query: 628 PIIFIDAGIHARXWVAPAMALYVIHRLIN 714
           P+ F++ GIHAR WV+PA  +Y+  +L++
Sbjct: 10  PVFFMNCGIHAREWVSPATCMYIAKQLLS 38


>SB_1170| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
 Frame = +1

Query: 466 LNVFEYNSHAAIQDYLDTVAKRHPDLVRLQVLGTSYQGRVMRLVKISTNP---SAGNPII 636
           +  F+++++  +  +L   + ++PD+ RL  +G S Q R +  ++IS NP     G P  
Sbjct: 58  VETFQHHNYEKLTWFLKYFSLKYPDITRLYSIGYSVQNRKLWAMEISDNPGQHEPGEPEF 117

Query: 637 FIDAGIHARXWVAPAMALYVIHRLINDPEA 726
              A IH    V   + L +I  L  + E+
Sbjct: 118 KYIANIHGNEVVGRELLLQLIRYLCENYES 147


>SB_23383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 905

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
 Frame = +1

Query: 472 VFEYNSHAAIQDYLDTVAKRHPDLVRLQVLGTSYQGRVMRLVKISTNPSA---GNPIIFI 642
           +F++++H  +  +L  V + +P + RL   G S +GR + +++IS NP     G P    
Sbjct: 495 IFKHHTHKEMTSFLKKVHELYPHITRLYSAGYSVKGRELWVMEISDNPGTHEPGEPEFKY 554

Query: 643 DAGIHARXWVAPAMALYVIHRL 708
              +H    V   M L +I  L
Sbjct: 555 VGNMHGNEVVGREMLLLLIQVL 576


>SB_44286| Best HMM Match : Peptidase_M14 (HMM E-Value=2.9e-08)
          Length = 139

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
 Frame = +1

Query: 475 FEYNSHAAIQDYLDTVAKRHPDLVRLQVLGTSYQGRVMRLVKISTNPSA---GNPIIFID 645
           F ++    I  ++ T+AKR P +  +  +G S Q R + ++++S  P     G P     
Sbjct: 1   FSHHQPDEIGKWMQTMAKRCPKIAHVYSIGMSVQFRRIWVMELSDKPGVHQPGKPEFSYV 60

Query: 646 AGIHARXWVAPAMALYVIHRL 708
           AGIH    V   M L +I  L
Sbjct: 61  AGIHGNEVVGKEMVLLLIQHL 81


>SB_49771| Best HMM Match : Peptidase_M14 (HMM E-Value=1.1e-34)
          Length = 635

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 16/52 (30%), Positives = 30/52 (57%)
 Frame = +1

Query: 475 FEYNSHAAIQDYLDTVAKRHPDLVRLQVLGTSYQGRVMRLVKISTNPSAGNP 630
           ++Y+ +  +   L +   + P ++RLQ +G S +GR +  ++IS NP   NP
Sbjct: 9   YKYHDYKTMTQMLQSYYLKCPGIIRLQSIGKSQEGRKIWSLEISVNPGQENP 60


>SB_34368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 35.9 bits (79), Expect = 0.035
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 628 PIIFIDAGIHARXWVAPAMALYVIHRLI 711
           P+ +   GIHAR W++PA  +Y I +++
Sbjct: 479 PVFYWQCGIHAREWISPATCMYAIDQMV 506


>SB_808| Best HMM Match : ZZ (HMM E-Value=2.9e-05)
          Length = 681

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = +1

Query: 232 TSQLENITRF-EDVDNQVEILKQSRGINDSLDLIVPPNKLDYVQSYAQNTNLTYEIKRRN 408
           T+ L + + F E +D   E+L Q  G+  +     PP     VQS  Q      +++R+ 
Sbjct: 465 TTSLSSTSSFRESMDPIAELLSQLSGVRRAAQQAQPP-----VQSQLQLLQQQLQLERQQ 519

Query: 409 YGRSFESPERVPRRR 453
             ++ E  ER+P+RR
Sbjct: 520 VQQTRERLERLPQRR 534


>SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1218

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +1

Query: 163 WSNVRCDVNKYENYTLIRLFPETTSQLENITRFEDVDNQVEILKQ 297
           WSN++ ++ K     +  L  E++ + E  TR E+ DNQ+  LKQ
Sbjct: 78  WSNLKTELEKSHREKIHEL--ESSYRKEKSTREEEFDNQMWELKQ 120


>SB_3254| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = +1

Query: 151 FLGLWSNVRCDVNKYENYTLIRLFPETTSQLENITRFEDVDNQVEILKQSRGINDSLDLI 330
           F+ +  +V  D+N    + L+R        L  +TR   +DN ++ L  S    D++D++
Sbjct: 74  FIRVHQHVYDDINANSKFELLRSTRHFGGLLYYLTRLRKLDNLLDELTDSGRFQDAIDVV 133


>SB_42416| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/29 (41%), Positives = 23/29 (79%)
 Frame = +1

Query: 265 DVDNQVEILKQSRGINDSLDLIVPPNKLD 351
           D+D++VE+ K S  I+++L L++ P+KL+
Sbjct: 3   DLDDRVEVRKLSLPISNNLYLLIHPDKLN 31


>SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2250

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
 Frame = +1

Query: 436  RVPRRRLLRGLNVFEYNSHAAIQDYLDTVAKRHPDLVRLQVLGTSYQGRVMRLVKISTNP 615
            R P   L   + V ++++   ++  LD   K+   L +++++ T  +  +++   I  N 
Sbjct: 745  RSPPHMLQEIVMVDDFSNKDFLKQKLDDYTKK---LGKIKIVRTKERVGLIKARVIGANN 801

Query: 616  SAGNPIIFIDAGIHA-RXWVAPAMALYVIHR 705
            + G  +IF+DA     + W+ P +    ++R
Sbjct: 802  AVGEVVIFLDAHCECNKGWLPPLLERIALNR 832


>SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28)
          Length = 336

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 223 PETTSQLENITRFEDVDNQVEILKQSRGINDSLDLIVPPNKLDY 354
           P+T S + + TR E   +Q E  +    + DS+D  +P  KL+Y
Sbjct: 205 PDTASAISD-TRSESTSHQTECPEMQINL-DSIDFSIPAGKLNY 246


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,280,856
Number of Sequences: 59808
Number of extensions: 521521
Number of successful extensions: 1313
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)