Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0341
(750 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 26 0.43
S76958-1|AAB33933.1| 90|Apis mellifera olfactory receptor prot... 25 0.57
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 25 0.76
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 25 0.76
AF004842-1|AAD01205.1| 598|Apis mellifera major royal jelly pro... 25 1.0
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 24 1.8
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 24 1.8
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 23 2.3
DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 23 3.1
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 4.0
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 4.0
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 23 4.0
DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex det... 22 5.3
DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex det... 22 5.3
DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex det... 22 5.3
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 22 5.3
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 22 5.3
AY313893-1|AAQ82184.1| 437|Apis mellifera major royal jelly pro... 22 5.3
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 22 7.1
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 22 7.1
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 25.8 bits (54), Expect = 0.43
Identities = 16/68 (23%), Positives = 30/68 (44%)
Frame = +3
Query: 432 RTSSKKETTSWTQRFRI*LACRYPRLFGHSGKKTPGSRSSPSPGYQLPRQSDEARENIHQ 611
R +SK+ + T+R R R P++ KT + ++ Y ++ N +
Sbjct: 293 RETSKERSRDRTERER----SREPKIISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNYN 348
Query: 612 SKCRKSYY 635
+ C+K YY
Sbjct: 349 NNCKKLYY 356
>S76958-1|AAB33933.1| 90|Apis mellifera olfactory receptor
protein.
Length = 90
Score = 25.4 bits (53), Expect = 0.57
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = -1
Query: 630 RISGTWIGGYFH 595
R++GTW+GG+ H
Sbjct: 4 RMTGTWVGGFCH 15
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 25.0 bits (52), Expect = 0.76
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -3
Query: 589 SSLCLGSWYPGLGDERDPGVFLP 521
S L GS PG G E DP F P
Sbjct: 387 SGLVSGSSTPGTGREHDPAKFPP 409
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 25.0 bits (52), Expect = 0.76
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 252 DVLQLTRSLGEQTYECVIFVFVDITAHVT 166
D+L++ S E+ Y C + DIT ++T
Sbjct: 216 DILEVPASRNEEYYPCCTEPYSDITFNIT 244
>AF004842-1|AAD01205.1| 598|Apis mellifera major royal jelly
protein MRJP5 protein.
Length = 598
Score = 24.6 bits (51), Expect = 1.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 723 FRIIDQSMNDVQCHSGCNPXSGVNTSINKYN 631
FRI+ ++ND+ ++ C N + NK+N
Sbjct: 567 FRILGANVNDLIMNTRCANSDNQNNNQNKHN 597
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 23.8 bits (49), Expect = 1.8
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -1
Query: 159 SKETKHQRNP--RHYFSNNYHKYNTIRKYDFKQL 64
S +T H N + ++NNY+ YN ++K+L
Sbjct: 319 SNKTIHNNNNYNNNNYNNNYNNYNNNNYNNYKKL 352
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 23.8 bits (49), Expect = 1.8
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -1
Query: 156 KETKHQRNPRHYFSNNYHKYNTIRKYDFKQLKWLLYVK 43
+E +R SNNY+ N KY++ LY K
Sbjct: 306 RERSKERKIISSLSNNYNYNNNNYKYNYNNYNKKLYYK 343
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 23.4 bits (48), Expect = 2.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 159 SKETKHQRNPRHYFSNNYHKYNTIRKYDFKQLKWLLY 49
S +T H N +Y +NNY+ YN ++ K L Y
Sbjct: 86 SNKTIHNNN--NYNNNNYNNYN-YNNNNYNNYKKLYY 119
>DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.0 bits (47), Expect = 3.1
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = -1
Query: 120 FSNNYHKYNTIRKYDFKQLKW 58
++NNY+ YN ++K+L++
Sbjct: 94 YNNNYNNYNNNYNTNYKKLQY 114
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 4.0
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -1
Query: 252 DVLQLTRSLGEQTYECVIFVFVDITAHVT 166
D+L++ E+ Y C ++DIT ++T
Sbjct: 211 DILEVPAVRNEKFYTCCDEPYLDITFNIT 239
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 4.0
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -1
Query: 252 DVLQLTRSLGEQTYECVIFVFVDITAHVT 166
D+L++ E+ Y C ++DIT ++T
Sbjct: 211 DILEVPAVRNEKFYTCCDEPYLDITFNIT 239
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 22.6 bits (46), Expect = 4.0
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -1
Query: 252 DVLQLTRSLGEQTYECVIFVFVDITAHVT 166
D+L++ E+ Y C ++DIT ++T
Sbjct: 207 DILEVPAVRNEKFYTCCDEPYLDITFNIT 235
>DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 22.2 bits (45), Expect = 5.3
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +3
Query: 501 PRLFGHSGKKTPGSRSSPSPGYQLPRQSDEARENIHQ 611
PR F H G TP R P Y+ + E+ HQ
Sbjct: 142 PR-FRHIGPSTPFPRFIPPNAYRFRPSLNPRFESTHQ 177
>DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 22.2 bits (45), Expect = 5.3
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +3
Query: 501 PRLFGHSGKKTPGSRSSPSPGYQLPRQSDEARENIHQ 611
PR F H G TP R P Y+ + E+ HQ
Sbjct: 142 PR-FRHIGPSTPFPRFIPPNAYRFRPSLNPRFESTHQ 177
>DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 22.2 bits (45), Expect = 5.3
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +3
Query: 501 PRLFGHSGKKTPGSRSSPSPGYQLPRQSDEARENIHQ 611
PR F H G TP R P Y+ + E+ HQ
Sbjct: 142 PR-FRHIGPSTPFPRFIPPNAYRFRPSLNPRFESTHQ 177
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 22.2 bits (45), Expect = 5.3
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +1
Query: 214 RLFPETTSQLENITRFEDVDNQVEILKQSRGIND----SLDLIVPP 339
++FP T +EN+ R D + + ++G + + ++VPP
Sbjct: 538 KVFPNGTLIIENVERMSDQATYTCVARNAQGYSARGTLEVQVMVPP 583
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 22.2 bits (45), Expect = 5.3
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +3
Query: 501 PRLFGHSGKKTPGSRSSPSPGYQLPRQSDEARENIHQ 611
PR F H G TP R P Y+ + E+ HQ
Sbjct: 375 PR-FRHIGPSTPFPRFIPPNAYRFRPSLNPRFESTHQ 410
>AY313893-1|AAQ82184.1| 437|Apis mellifera major royal jelly
protein MRJP6 protein.
Length = 437
Score = 22.2 bits (45), Expect = 5.3
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -1
Query: 723 FRIIDQSMNDVQCHSGCNPXSGVNTSINKY 634
FRI+ ++N++ ++ C + N + NKY
Sbjct: 401 FRILGANVNNLIKNTRCAKSNNQNNNQNKY 430
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.8 bits (44), Expect = 7.1
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -3
Query: 307 FLCFALIFLLDYQHLQSV 254
F+CF L++ + Y H+ V
Sbjct: 416 FVCFNLMYWIIYLHISDV 433
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.8 bits (44), Expect = 7.1
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -3
Query: 307 FLCFALIFLLDYQHLQSV 254
F+CF L++ + Y H+ V
Sbjct: 416 FVCFNLMYWIIYLHISDV 433
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,137
Number of Sequences: 438
Number of extensions: 5240
Number of successful extensions: 35
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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