Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0341
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43990.1 68415.m05470 expressed protein                             30   1.4  
At4g27010.1 68417.m03885 expressed protein  ; expression support...    29   2.5  
At5g49660.1 68418.m06147 leucine-rich repeat transmembrane prote...    29   3.3  
At3g57100.1 68416.m06357 hypothetical protein similar to At14a (...    28   7.6  

>At2g43990.1 68415.m05470 expressed protein
          Length = 632

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 419 LLSHQNEFQEGDYFVDSTFSNITRMPLSKTIWTQW 523
           +L+  +EF EGD+  D ++ +I+ MPL       W
Sbjct: 297 ILNDSDEFDEGDFGNDGSYDDISVMPLPADASVHW 331


>At4g27010.1 68417.m03885 expressed protein  ; expression supported
           by MPSS
          Length = 2535

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/42 (28%), Positives = 26/42 (61%)
 Frame = +2

Query: 557 SWVPATKAE**GS*KYPPIQVPEILLYLLMLVFTPXNGLHPL 682
           SW P ++++  G  + PP+    + +++ +L+F+P NG+  L
Sbjct: 654 SWTPKSQSDR-GPTRIPPLMHKHLRVFINLLLFSPHNGVKDL 694


>At5g49660.1 68418.m06147 leucine-rich repeat transmembrane protein
           kinase, putative contains leucine rich repeat (LRR)
           domains, Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 966

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 28/83 (33%), Positives = 43/83 (51%)
 Frame = +1

Query: 154 LGLWSNVRCDVNKYENYTLIRLFPETTSQLENITRFEDVDNQVEILKQSRGINDSLDLIV 333
           +G  SN+R  +  Y NY L    PE    L+N+T   D+D  + + + +  I DS+  + 
Sbjct: 239 IGNLSNLR-QLELYYNYHLTGSIPEEIGNLKNLT---DID--ISVSRLTGSIPDSICSL- 291

Query: 334 PPNKLDYVQSYAQNTNLTYEIKR 402
            PN L  +Q Y  N +LT EI +
Sbjct: 292 -PN-LRVLQLY--NNSLTGEIPK 310


>At3g57100.1 68416.m06357 hypothetical protein similar to At14a
           (GI:11994571 and GI:11994573) [Arabidopsis thaliana];
           contains Pfam PF05055 : Protein of unknown function
           (DUF677); contains Prosite PS00453: FKBP-type
           peptidyl-prolyl cis-trans isomerase signature 1;
           contains one transmembrane domain
          Length = 359

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 388 YEIKRRNYGRSFESPERVPRRRLLRGLNVFEYNSHAAIQDYLD 516
           +E+++  YG S E        R LR  N F YN+++  +D LD
Sbjct: 126 FELEKLGYGGSLEEASFRKTYRDLRNFNAF-YNNNSGEEDDLD 167


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,933,589
Number of Sequences: 28952
Number of extensions: 363704
Number of successful extensions: 1002
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)