Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0340
         (700 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4VIE8 Cluster: Transposase and inactivated derivative;...    34   2.9  
UniRef50_A7MEK0 Cluster: Putative uncharacterized protein; n=2; ...    33   5.1  

>UniRef50_A4VIE8 Cluster: Transposase and inactivated derivative;
           n=34; Proteobacteria|Rep: Transposase and inactivated
           derivative - Pseudomonas stutzeri (strain A1501)
          Length = 184

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 565 ILRIHHIXPFASHCWVLTPXXGHCVVSLP 651
           + R+H + PF    WV+ P   HCV +LP
Sbjct: 40  VRRVHRLHPFTIDAWVVLPEHMHCVWTLP 68


>UniRef50_A7MEK0 Cluster: Putative uncharacterized protein; n=2;
           Enterobacteriaceae|Rep: Putative uncharacterized protein
           - Enterobacter sakazakii ATCC BAA-894
          Length = 172

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 514 RPRILFCNWIS*TFLSIILRIHHIXPFASHCWVLTPXXGHCVVSLPSLNH 663
           R  +L C +I     + + R+    PF    WV+ P   HC+ +LP  +H
Sbjct: 23  RRSLLLCRYID-LLRAQVARVKRRYPFTIDAWVVLPEHMHCIWTLPEGDH 71


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 422,968,910
Number of Sequences: 1657284
Number of extensions: 5407006
Number of successful extensions: 14992
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14961
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)