Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0340
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein.     29   4.2  
AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (droso...    29   4.2  
AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (droso...    29   4.2  
AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso...    29   4.2  
AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso...    29   4.2  
AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein.     29   4.2  

>AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein.
          Length = 4250

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 156  NGAKAGADTDRDAGESSGVVVQPQEE 233
            N  +A   T  +  ESSG+++QPQ E
Sbjct: 2755 NSGEASTSTSFEVSESSGLILQPQNE 2780


>AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (drosophila
            actin-binding)homolog protein 1, isoform b protein.
          Length = 4203

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 156  NGAKAGADTDRDAGESSGVVVQPQEE 233
            N  +A   T  +  ESSG+++QPQ E
Sbjct: 2672 NSGEASTSTSFEVSESSGLILQPQNE 2697


>AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (drosophila
            actin-binding)homolog protein 1, isoform a protein.
          Length = 4488

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 156  NGAKAGADTDRDAGESSGVVVQPQEE 233
            N  +A   T  +  ESSG+++QPQ E
Sbjct: 2993 NSGEASTSTSFEVSESSGLILQPQNE 3018


>AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (drosophila
            actin-binding)homolog protein 1, isoform d protein.
          Length = 4369

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 156  NGAKAGADTDRDAGESSGVVVQPQEE 233
            N  +A   T  +  ESSG+++QPQ E
Sbjct: 2993 NSGEASTSTSFEVSESSGLILQPQNE 3018


>AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (drosophila
            actin-binding)homolog protein 1, isoform c protein.
          Length = 4447

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 156  NGAKAGADTDRDAGESSGVVVQPQEE 233
            N  +A   T  +  ESSG+++QPQ E
Sbjct: 2993 NSGEASTSTSFEVSESSGLILQPQNE 3018


>AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein.
          Length = 4219

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 156  NGAKAGADTDRDAGESSGVVVQPQEE 233
            N  +A   T  +  ESSG+++QPQ E
Sbjct: 2688 NSGEASTSTSFEVSESSGLILQPQNE 2713


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,898,167
Number of Sequences: 27780
Number of extensions: 133129
Number of successful extensions: 447
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)