Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0340
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    26   0.30 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.69 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   6.4  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   6.4  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 499 LHNLWRPRILFCNWIS*TFLSIILRIHHI 585
           LHN+WRP   F N    TF  + +  H++
Sbjct: 84  LHNIWRPDCFFKNAKKVTFHEMSIPNHYL 112


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 499 LHNLWRPRILFCNWIS*TFLSIILRIHHI 585
           L N+WRP   F N  S TF ++ +  H++
Sbjct: 115 LKNMWRPDSFFKNAKSVTFQTMTIPNHYL 143


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 3   LSFCRIFAFKLNF 41
           ++FCR+F F L F
Sbjct: 209 MTFCRVFPFHLMF 221


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 3   LSFCRIFAFKLNF 41
           ++FCR+F F L F
Sbjct: 209 MTFCRVFPFHLMF 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,587
Number of Sequences: 438
Number of extensions: 1599
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)