Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0339
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   2.6  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   4.6  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   4.6  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   4.6  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +1

Query: 256 QERSSQAEDPVDSEAKEPGERPPERLSESSNQRVHNRKTIKEKHSDSE 399
           +E   + +D    + ++ GE   E   +   ++   +KTIKEK+++ E
Sbjct: 233 KEEEGEDKDKDKPKIEDVGEDEDEDTKKEDKKK---KKTIKEKYTEDE 277


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 61  LGLALETVLRSLNNLLEAFHQSYFFYML 144
           LGL+L  V +   NLLE  ++ +  Y L
Sbjct: 385 LGLSLLQVAQIFKNLLENHYEEFVRYEL 412


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +3

Query: 468 PNPTKLQHGQCRCQLSVGARAGV 536
           PN T      C+C L+ G   G+
Sbjct: 142 PNATNTVWSHCQCVLADGVERGI 164


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +3

Query: 468 PNPTKLQHGQCRCQLSVGARAGV 536
           PN T      C+C L+ G   G+
Sbjct: 142 PNATNTVWSHCQCVLADGVERGI 164


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.313    0.129    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,734
Number of Sequences: 336
Number of extensions: 2550
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)