Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0339
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ... 58 2e-09
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo... 31 0.23
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 30 0.31
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 30 0.40
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 29 0.54
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe... 29 0.71
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 28 1.2
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 27 2.2
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 26 5.0
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 26 6.6
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub... 25 8.7
>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 581
Score = 57.6 bits (133), Expect = 2e-09
Identities = 26/44 (59%), Positives = 31/44 (70%)
Frame = +1
Query: 58 RLGLALETVLRSLNNLLEAFHQSYFFYMLPATDRFVSIGQYMPS 189
R G A+E+ RSLNNLLE HQS+FFY + F+SIG YMPS
Sbjct: 333 RFGQAIESTFRSLNNLLEHLHQSFFFYFILDHLHFISIGNYMPS 376
>SPAC12B10.07 |acp1||F-actin capping protein alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 256
Score = 30.7 bits (66), Expect = 0.23
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Frame = -1
Query: 258 LCRLDAHPQRQRAEQHGRAHQAQAGHVLADGHKPIGGGQHVEEVA-LVEGLQQVVEGAED 82
+C + ++ H R H + G+V D +PI VEE + L E L QV G +
Sbjct: 158 ICNYNVSEKKLEGRSHIRVHYYEDGNVWLDASRPISA--TVEETSKLYEVLAQVENGIQQ 215
Query: 81 GLEREAEAVEVSGGERVHARRRPVPR 4
E ++ + + R+ PV R
Sbjct: 216 SFNVELSSLNDKKFKELR-RQLPVTR 240
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 30.3 bits (65), Expect = 0.31
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Frame = +1
Query: 253 TQERSSQAEDPVDSEAKEPGERPPERLSESSNQRVHNRKTIKEK-----HSDSESEIPGE 417
++ SS +E + E E E E SESS+ + + E SDSESE E
Sbjct: 175 SESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESESSSE 234
Query: 418 QDVKEVVQ-SSDERVA 462
+ K + +S+ER A
Sbjct: 235 DEKKRKAEPASEERPA 250
Score = 29.9 bits (64), Expect = 0.40
Identities = 15/72 (20%), Positives = 30/72 (41%)
Frame = +1
Query: 253 TQERSSQAEDPVDSEAKEPGERPPERLSESSNQRVHNRKTIKEKHSDSESEIPGEQDVKE 432
T+E+ + + S E E ++ E + S+SES ++ +E
Sbjct: 130 TEEKKESSSESSSSSESEEEEEAVVKIEEKKESSSDSSSESSSSESESESSSSESEEEEE 189
Query: 433 VVQSSDERVANS 468
VV+ ++E+ S
Sbjct: 190 VVEKTEEKKEGS 201
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/70 (20%), Positives = 32/70 (45%)
Frame = +1
Query: 238 VGVQPTQERSSQAEDPVDSEAKEPGERPPERLSESSNQRVHNRKTIKEKHSDSESEIPGE 417
V + +++ + +A P S+ ++ ++ ESS++ + + + S SESE
Sbjct: 49 VSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSESESSSSESESSSS 108
Query: 418 QDVKEVVQSS 447
+ +SS
Sbjct: 109 ESESSSSESS 118
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 29.9 bits (64), Expect = 0.40
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Frame = +1
Query: 241 GVQPTQERSSQAEDPVDSEAKEPGERPPERLSESS---NQRVHNRKTIKEKHSDSESEIP 411
GV+PT + A+ +S K E E+ + S N+ K EK S +
Sbjct: 48 GVEPTNTSRANAQKKTESTGKITSEADTEKYNSSKSPVNKEGSVEKKSSEKSSTNNKPWR 107
Query: 412 GEQDVKEVVQSSDERVAN 465
G+ K SS ER ++
Sbjct: 108 GDNTSKPSANSSAERTSS 125
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 29.5 bits (63), Expect = 0.54
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Frame = +1
Query: 247 QPTQERSSQAEDPVDSEAKEPGERPPERLSESSN--QRVHNRKTIKEKHSDSESEIPGEQ 420
QP + + S D +AKE E+P ++ SN Q N + K + E+ IP
Sbjct: 808 QPVEVQKSIQSDVSAPKAKEVSEKPVSHQAKPSNASQLSRNTDDTQAKEAPKEASIPDNA 867
Query: 421 DVKEVVQSSDERV 459
S+D +
Sbjct: 868 STASTKVSNDSHL 880
>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 455
Score = 29.1 bits (62), Expect = 0.71
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 424 VKEVVQSSDERVANSQTQLNFSMVNVGANYLLVHVLGYAAMNSPV 558
+K+ +Q+ + A S L S +NV N+LLVH G +P+
Sbjct: 147 LKKFLQTQEITRAGSYILLVTSPLNVALNFLLVHYYGLGLKGAPL 191
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/45 (40%), Positives = 20/45 (44%)
Frame = -1
Query: 147 GQHVEEVALVEGLQQVVEGAEDGLEREAEAVEVSGGERVHARRRP 13
G HV V L VE + LERE EA+E S V A P
Sbjct: 99 GVHVSAVQLDNETDSEVESEVEELERELEAIEDSVYPEVRAAVNP 143
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 382 KHSDSESEIPGEQDVKEVVQSSDERVANSQTQLNFSMVNVGANYLLVH 525
+ S SE E E+D K V S+D+ + + S N GA+ L++
Sbjct: 632 EESGSEDEFKSEKDTKGYVISNDDSTQVEEDSEDKSTPNTGASAKLIN 679
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 26.2 bits (55), Expect = 5.0
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +1
Query: 292 SEAKEPGERPPERLSE-SSNQRVHNRKTIKEKHSDSESEIPGEQDVKEVVQSSDERVANS 468
SE ++ ER+ + SSN R N + +KE+ +D ES++ ++ ++ V + +
Sbjct: 244 SELEKLKAAQEERIEKLSSNNR--NVEILKEEKNDLESKLYRFEEYRDKVATLELENEKI 301
Query: 469 QTQLN 483
QT+LN
Sbjct: 302 QTELN 306
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.8 bits (54), Expect = 6.6
Identities = 19/73 (26%), Positives = 30/73 (41%)
Frame = +1
Query: 253 TQERSSQAEDPVDSEAKEPGERPPERLSESSNQRVHNRKTIKEKHSDSESEIPGEQDVKE 432
T+E ++ D DS+ PPE+ SS + + S SESE E +
Sbjct: 72 TKESLEKSND--DSQKISKKGAPPEKAHSSSEASGSGSSSDESDSSSSESESSSEDNDSS 129
Query: 433 VVQSSDERVANSQ 471
S E ++S+
Sbjct: 130 SSSSDSESESSSE 142
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/69 (24%), Positives = 25/69 (36%)
Frame = +1
Query: 265 SSQAEDPVDSEAKEPGERPPERLSESSNQRVHNRKTIKEKHSDSESEIPGEQDVKEVVQS 444
SS + +SE+ G S S ++ SDSESE E S
Sbjct: 146 SSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSS 205
Query: 445 SDERVANSQ 471
E ++S+
Sbjct: 206 DSESESSSE 214
Score = 25.4 bits (53), Expect = 8.7
Identities = 21/77 (27%), Positives = 32/77 (41%)
Frame = +1
Query: 241 GVQPTQERSSQAEDPVDSEAKEPGERPPERLSESSNQRVHNRKTIKEKHSDSESEIPGEQ 420
G + SS +E SE + + SESS++ + + SDSESE E
Sbjct: 106 GSSSDESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSS----SSDSESESSSEG 161
Query: 421 DVKEVVQSSDERVANSQ 471
SS E ++S+
Sbjct: 162 SDSSSSSSSSESESSSE 178
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/69 (24%), Positives = 25/69 (36%)
Frame = +1
Query: 265 SSQAEDPVDSEAKEPGERPPERLSESSNQRVHNRKTIKEKHSDSESEIPGEQDVKEVVQS 444
SS + +SE+ G S S ++ SDSESE E S
Sbjct: 200 SSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSS 259
Query: 445 SDERVANSQ 471
E ++S+
Sbjct: 260 DSESESSSK 268
Score = 25.4 bits (53), Expect = 8.7
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Frame = +1
Query: 259 ERSSQAEDPVDSEAKEPGE-RPPERLSESSNQRVHNRKTIKEKHSDSESEIPGEQDVKEV 435
E S +ED S + E + S+SS+ + SDSESE E D
Sbjct: 244 ESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSE-DSDST 302
Query: 436 VQSSDERVANSQTQLN 483
SSD ++S N
Sbjct: 303 SSSSDSDSSSSSEDGN 318
>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 214
Score = 25.4 bits (53), Expect = 8.7
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Frame = +1
Query: 247 QPTQERSSQA---EDPVDSEAKEPGERPPERLSESSNQRVHNRKTIKEKHSDSESEIPGE 417
QP ++ +A E+P EA+EP E E E + + + EK + + P
Sbjct: 107 QPEEKEGKEAKEPEEPPKEEAEEPQEGGEEEEEEEEEEEITDP---LEKMTQECMDAPDC 163
Query: 418 QDVKEVVQSSDERVANSQTQ 477
++VK + RV Q
Sbjct: 164 KEVKHHFEECTARVTKKVEQ 183
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.129 0.367
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,242,260
Number of Sequences: 5004
Number of extensions: 38339
Number of successful extensions: 121
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
- SilkBase 1999-2023 -