Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0339
         (750 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF395079-1|AAK97461.1|  371|Anopheles gambiae basic helix-loop-h...    27   0.82 
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    24   4.4  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           24   5.8  
AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.           24   5.8  
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    24   5.8  

>AF395079-1|AAK97461.1|  371|Anopheles gambiae basic
           helix-loop-helix transcriptionfactor ASH protein.
          Length = 371

 Score = 26.6 bits (56), Expect = 0.82
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 11/65 (16%)
 Frame = -1

Query: 642 HG-GGHAQAVVHRHLGGQTKVFG----------AELREEDGRVHGGVPQHVHQQIVGTDI 496
           HG GG   + VH H GG + V G          A+ +++    H   PQ  HQQ   +  
Sbjct: 271 HGIGGVTSSSVHLHTGGHSTVLGSATDNNNYILAQQQQQQHHHHQHQPQQQHQQQYHSHP 330

Query: 495 DHAEV 481
            H  V
Sbjct: 331 HHTPV 335


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1201

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 305  NQESDRLNDYQKAQTSECTTGRR 373
            NQ++DR + Y    TSE   GRR
Sbjct: 1102 NQDNDRTSLYSARNTSEEQRGRR 1124



 Score = 24.2 bits (50), Expect = 4.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 168  GHKPIGGGQHVEEVALVEGLQQVVEGAEDGLEREAE 61
            GH  +GG    E+  LVE  +Q + GAE     EA+
Sbjct: 1163 GHS-VGGVTSQEDGTLVEASRQGMNGAEKTAATEAD 1197


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 234 QRQRAEQHGRAHQAQAGH 181
           Q+Q+  QH +AHQ Q  H
Sbjct: 642 QQQQQHQHHQAHQHQGQH 659


>AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.
          Length = 753

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = -1

Query: 237 PQRQRAEQHGRAHQAQAGHVLADGHKPIGGGQHVEEVALVEGLQQ 103
           PQ Q+ +Q  +  Q Q+G     G   +   Q ++  A   G  Q
Sbjct: 424 PQSQQQQQQQQQQQQQSGSATWSGSNTLNYTQSIQPPAHASGSHQ 468


>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-containing
            phosphoprotein protein.
          Length = 1200

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +1

Query: 295  EAKEPGERPPERLSESSNQRVHNRKTIKEKHSDSESE 405
            E K  GE+ P +       R    K  +    DS+SE
Sbjct: 936  ERKRKGEKKPRKSQGGGGSRKRKEKARRGSGGDSDSE 972


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.313    0.129    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 609,575
Number of Sequences: 2352
Number of extensions: 11314
Number of successful extensions: 35
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 77339358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)