Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0338
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    23   2.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.6  
AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical pro...    22   4.6  

>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 344 KLAFVIRIRGINQVSPKVRKVLQL 415
           KL FV+R+ GI  +   +RK ++L
Sbjct: 359 KLWFVLRLYGIENLQAFIRKHVEL 382


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 733 SWIVQFEGPQEITRVLELFSNSE 665
           SW+  F+G   ITR +  +  S+
Sbjct: 915 SWVAPFDGNSPITRYMIEYKQSK 937


>AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical
           protein protein.
          Length = 102

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 570 LSLANPRLYTNSRTLF 523
           LS A PRL  N+RT+F
Sbjct: 87  LSSAFPRLKRNARTIF 102


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,630
Number of Sequences: 336
Number of extensions: 3784
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)