Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0338
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)      301   3e-82
SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)                30   1.7  
SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.3  
SB_17338| Best HMM Match : LRR_2 (HMM E-Value=0.34)                    28   7.0  
SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  
SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)                    28   9.3  
SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_50079| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_39708| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score =  301 bits (740), Expect = 3e-82
 Identities = 144/217 (66%), Positives = 171/217 (78%)
 Frame = +2

Query: 98  EDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKE 277
           +D  K+P VPE++LK             +  L ++     K++EIFKRAE+YVKEYR KE
Sbjct: 3   QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKE 62

Query: 278 RDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRL 457
            DE+R+ + A+  GN+YVP EA+LAFVIRIRGIN VSPKVRK+LQL RLRQINNGVFVRL
Sbjct: 63  VDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKVRKILQLLRLRQINNGVFVRL 122

Query: 458 NKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNII 637
           NKAT NMLRI +PYIA+GYPNLKSVREL+YKRG+ K+  QR+ +T NSIVEK L KH II
Sbjct: 123 NKATANMLRIVQPYIAFGYPNLKSVRELIYKRGYGKVDKQRVALTDNSIVEKVLGKHGII 182

Query: 638 CVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRK 748
           CVEDLIHEIFTVGE FK ASNFLWPFKL++P GG+RK
Sbjct: 183 CVEDLIHEIFTVGEHFKEASNFLWPFKLSSPKGGFRK 219


>SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)
          Length = 546

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 297 PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSV 401
           P +HA    T  P + N H +S S  +T   RRSV
Sbjct: 318 PFRHATTTITVLPSRYNNHTASSSHATTTIQRRSV 352


>SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1150

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = -1

Query: 453 RTNTPLFIWRSLNSCRTLRTFGETWLIPRIRMTNANLASPGT**LPRLRACLASLISSRS 274
           RT  PLF    L  C   R    TW  P + +  + L       +      +A L+ +RS
Sbjct: 295 RTRAPLFYSFLLTGCTARRRENVTW-FPSMALAGSILLKQRCSDMNTTACIMAVLVKTRS 353

Query: 273 LMRYSLTY--CSALLKIS 226
           + ++ L +  CS+ ++IS
Sbjct: 354 MEQFLLLFIVCSSEIQIS 371


>SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 440

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -3

Query: 697 TRVLELFSNSEDLMDEVLNTDNVVFMEPLLNNAVGSDWYTLSTQLGE 557
           T  +E+F      +DE +    V   E +LN     DWY+LS + GE
Sbjct: 53  TIYVEIFDERSFSVDERVAWGLVQIREDVLNGETIDDWYSLSGKQGE 99


>SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 200 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 325
           R  AI ++RE+++R E Y +    + R+  R     R R  Y
Sbjct: 16  RRRAINRRREMYRRREMYRRREMYRRREMYRRREMYRRREMY 57


>SB_17338| Best HMM Match : LRR_2 (HMM E-Value=0.34)
          Length = 743

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -1

Query: 687 LNFSPTVKISWMRSSTQIMLCLWSL-FSTMLLEVIGIRCPLSLANPRLYTNSRTLFKLGY 511
           L++S   KI + + +T    CLW       L ++ GI+ PL +A PR+   ++ L  LG 
Sbjct: 369 LDWSGEDKIKFFKKATG---CLWPPEILKELGDIFGIKDPLKVATPRVLRRNQKL--LGM 423

Query: 510 PQ 505
           P+
Sbjct: 424 PE 425


>SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 475

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 717 LKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSLFSTMLLEV 589
           LKGH K    L+++P V  + + +S    +CLW + S +  +V
Sbjct: 239 LKGHTKEGYGLSWNPNVNGNLLSASDDHTICLWDISSGISKDV 281


>SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 200 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 325
           R   + ++REI++R E Y +    + R+  RL    R R  Y
Sbjct: 27  RRREMYRRREIYRRREMYRRREMYRRREMYRLREMYRRREMY 68


>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
          Length = 712

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 272 KERDEIRLARQARNRGNYYVP 334
           K RD   +AR+ R+RG YY+P
Sbjct: 483 KIRDTSSIARETRSRGPYYLP 503


>SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1981

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 290  RLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRK 403
            RL R  + R NYY+  +  +AF + I  + +  P  R+
Sbjct: 1886 RLRRTEKRRQNYYIATQKLMAFALNIYEVLKDDPLTRR 1923


>SB_50079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -1

Query: 510 PQAM*GSAIRSIFTVALFRRTNTPLFIWRSLNSCRTLRTFG 388
           P+ +  + +  +++V+L  R N  LF  RSL SC   RT+G
Sbjct: 428 PRVLCATLLPVVYSVSLDSRYNE-LFTGRSLQSCGNQRTWG 467


>SB_39708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 653 IHEIFTVGEKFKYASNFLWPFKLNN 727
           ++ + T   KF YA++ LW F  NN
Sbjct: 58  LNRVITTTGKFSYATDDLWQFSCNN 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,476,393
Number of Sequences: 59808
Number of extensions: 472548
Number of successful extensions: 1148
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)