Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0338
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 256 9e-69
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 256 9e-69
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 253 8e-68
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 253 8e-68
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 253 8e-68
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 250 1e-66
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 153 9e-38
At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot... 30 1.9
At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 ... 30 1.9
At3g52860.1 68416.m05825 expressed protein 30 1.9
At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochro... 29 2.5
At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1... 29 3.3
At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1... 29 3.3
At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochro... 29 3.3
At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochro... 29 3.3
At5g13990.1 68418.m01636 exocyst subunit EXO70 family protein co... 28 7.6
At4g28470.1 68417.m04073 26S proteasome regulatory subunit, puta... 28 7.6
At3g21370.1 68416.m02698 glycosyl hydrolase family 1 protein con... 28 7.6
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 256 bits (628), Expect = 9e-69
Identities = 121/209 (57%), Positives = 153/209 (73%)
Frame = +2
Query: 122 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 301
VPESVLK + + +++ ++ IFKRAEQY KEY K+ + IRL R
Sbjct: 13 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 72
Query: 302 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 481
+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++NKATVNML
Sbjct: 73 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNML 132
Query: 482 RIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHE 661
R EPY+ +GYPNLKSV+EL+YKRG+ KL+ QRI +T NSIV++ L KH IICVEDLIHE
Sbjct: 133 RRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHE 192
Query: 662 IFTVGEKFKYASNFLWPFKLNNPTGGWRK 748
I TVG FK A+NFLWPF+L P GG +K
Sbjct: 193 IMTVGPHFKEANNFLWPFQLKAPLGGLKK 221
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 256 bits (628), Expect = 9e-69
Identities = 121/209 (57%), Positives = 153/209 (73%)
Frame = +2
Query: 122 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 301
VPESVLK + + +++ ++ IFKRAEQY KEY K+ + IRL R
Sbjct: 8 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 67
Query: 302 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 481
+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++NKATVNML
Sbjct: 68 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNML 127
Query: 482 RIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHE 661
R EPY+ +GYPNLKSV+EL+YKRG+ KL+ QRI +T NSIV++ L KH IICVEDLIHE
Sbjct: 128 RRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHE 187
Query: 662 IFTVGEKFKYASNFLWPFKLNNPTGGWRK 748
I TVG FK A+NFLWPF+L P GG +K
Sbjct: 188 IMTVGPHFKEANNFLWPFQLKAPLGGLKK 216
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 253 bits (620), Expect = 8e-68
Identities = 121/216 (56%), Positives = 155/216 (71%)
Frame = +2
Query: 101 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 280
+++ VPESVLK Q + +K++ IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 281 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLN 460
+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++N
Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122
Query: 461 KATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIIC 640
KAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++ L KH IIC
Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIIC 182
Query: 641 VEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRK 748
VEDLIHEI TVG FK A+NFLWPF+L P GG +K
Sbjct: 183 VEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKK 218
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 253 bits (620), Expect = 8e-68
Identities = 121/216 (56%), Positives = 155/216 (71%)
Frame = +2
Query: 101 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 280
+++ VPESVLK Q + +K++ IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 281 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLN 460
+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++N
Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122
Query: 461 KATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIIC 640
KAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++ L KH IIC
Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIIC 182
Query: 641 VEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRK 748
VEDLIHEI TVG FK A+NFLWPF+L P GG +K
Sbjct: 183 VEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKK 218
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 253 bits (620), Expect = 8e-68
Identities = 121/216 (56%), Positives = 155/216 (71%)
Frame = +2
Query: 101 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 280
+++ VPESVLK Q + +K++ IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 281 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLN 460
+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++N
Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122
Query: 461 KATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIIC 640
KAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++ L KH IIC
Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIIC 182
Query: 641 VEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRK 748
VEDLIHEI TVG FK A+NFLWPF+L P GG +K
Sbjct: 183 VEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKK 218
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 250 bits (611), Expect = 1e-66
Identities = 120/209 (57%), Positives = 150/209 (71%)
Frame = +2
Query: 122 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 301
VPESVLK Q + + ++ IFKRAEQY KEY KE++ I L R
Sbjct: 8 VPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKR 67
Query: 302 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 481
+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 68 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNML 127
Query: 482 RIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHE 661
R EPY+ +G+PNLKSV+EL+YKRG+ KL+ QRI +T NSIVE+ L KH IIC EDLIHE
Sbjct: 128 RRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTEDLIHE 187
Query: 662 IFTVGEKFKYASNFLWPFKLNNPTGGWRK 748
I TVG FK A+NFLWPF+L P GG +K
Sbjct: 188 ILTVGPHFKEANNFLWPFQLKAPLGGLKK 216
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 153 bits (372), Expect = 9e-38
Identities = 76/212 (35%), Positives = 121/212 (57%)
Frame = +2
Query: 95 KEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIK 274
+E++K L +PE VLK + S KKK KR E +V E+R K
Sbjct: 3 EEEAKGLDYIPEIVLKKRKNRDELAFIRKKQLELGNSGKKKKKVSDIKRPEDFVHEFRAK 62
Query: 275 ERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVR 454
E D IR+ ++ + + P ++ L F+IRI+G N + PK +++L +L+ + GVF +
Sbjct: 63 EVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGVFAK 122
Query: 455 LNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNI 634
+ L +PY+ +GYPN KSV++L+YK+G + G +P+T N+I+E+ L +H I
Sbjct: 123 ATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQALGEHKI 182
Query: 635 ICVEDLIHEIFTVGEKFKYASNFLWPFKLNNP 730
+ +EDL++EI VG+ F+ FL P KLN P
Sbjct: 183 LGIEDLVNEIARVGDHFREVMRFLGPLKLNKP 214
>At5g38830.1 68418.m04697 tRNA synthetase class I (C) family protein
similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC
6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus
subtilis}; contains Pfam profile PF01406: tRNA
synthetases class I (C)
Length = 511
Score = 29.9 bits (64), Expect = 1.9
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Frame = +3
Query: 120 LYQSQCSSIVRGERLFALG---DYRLR*RGVLLPSRRRGKSSRGLNSTSRNTASRNVMKS 290
+ + C +V G+ F++ +Y + G LL R G+ ++S RN A + K+
Sbjct: 134 IIEKDCGYVVEGDVFFSVDKSPNYG-KLSGQLLEHTRAGERV-AVDSRKRNPADFALWKA 191
Query: 291 D*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSVKF 407
PD+ + + PG+P WH+ ++ H S KF
Sbjct: 192 AKPDEPSWESPWG-PGRPGWHIECSAM---SVHYLSPKF 226
>At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 WD-40
repeats (PF00400) (2 weak)
Length = 1108
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -1
Query: 717 LKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSLFSTMLLEVIGIRCPLSLA 559
LKGH+K + L FS + I + S +C WS+ + + + I+ P A
Sbjct: 900 LKGHQKRITGLAFSTALNI-LVSSGADAQICFWSIDTWEKRKSVAIQMPAGKA 951
>At3g52860.1 68416.m05825 expressed protein
Length = 156
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 179 LQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 289
++ LK + IKK +F+ +++ VKE K RDE+
Sbjct: 117 MEEELKTKDELIKKHMRLFQESQKLVKEQIEKHRDEL 153
>At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400);
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]
Length = 837
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 747 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSL 613
LR P + L + GH K ++Y+ F + + + SST L LW L
Sbjct: 690 LRNPKIPLCTMIGHSKTVSYVKFVDSSTL--VSSSTDNTLKLWDL 732
>At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1)
contains Pfam profile: PF00249 Myb-like DNA-binding
domain
Length = 634
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +3
Query: 300 DKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSVKFCNCLD 422
DK VA T F G NWH S+ V + ++ NCLD
Sbjct: 341 DKRVKVAVTLF-GSQNWHKISQFVPGRTQTQCRERWLNCLD 380
>At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1)
contains Pfam profile: PF00249 Myb-like DNA-binding
domain
Length = 847
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +3
Query: 300 DKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSVKFCNCLD 422
DK VA T F G NWH S+ V + ++ NCLD
Sbjct: 554 DKRVKVAVTLF-GSQNWHKISQFVPGRTQTQCRERWLNCLD 593
>At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 747 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSL 613
LR P + L + GH K ++Y+ F + + + SST L LW L
Sbjct: 648 LRNPKLPLCTMIGHHKTVSYVRFVDSSTL--VSSSTDNTLKLWDL 690
>At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 747 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSL 613
LR P + L + GH K ++Y+ F + + + SST L LW L
Sbjct: 648 LRNPKLPLCTMIGHHKTVSYVRFVDSSTL--VSSSTDNTLKLWDL 690
>At5g13990.1 68418.m01636 exocyst subunit EXO70 family protein
contains Pfam domain PF03081: Exo70 exocyst complex
subunit;
Length = 695
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -3
Query: 742 PTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLNTDNVV-FMEPLLNNA 599
P T W ++ P+E++ +LE LM +LNT + + E L+N+A
Sbjct: 136 PKTVW---YQDPEEVSSLLEAVDRVSKLMGLLLNTKSCLDHHESLINHA 181
>At4g28470.1 68417.m04073 26S proteasome regulatory subunit, putative
contains Pfam domain PF01851: Proteasome/cyclosome repeat
Length = 1103
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = -1
Query: 492 SAIRSIFTVALFRRTNTPLFIWRSLNSCRTLRTFGETWLIPRIRMT 355
S R FT++ F+R N+ + I+R+ C TL + ++W+ +I+ +
Sbjct: 1059 SVPRKWFTISPFKRKNSFIAIYRNF-LCTTLISHSKSWISFQIQFS 1103
>At3g21370.1 68416.m02698 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase (GI:757740) [Brassica
napus]; similar to beta-glucosidase GB:AAB64244 from
[Arabidopsis thaliana], (Plant Mol. Biol. 34 (1), 57-68
(1997))
Length = 527
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 328 RSRGSQIGICHPNPWYQPSFTEG 396
+ +G +IGI H W++P EG
Sbjct: 263 KCKGGKIGIAHSPAWFEPEDVEG 285
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,629,558
Number of Sequences: 28952
Number of extensions: 324649
Number of successful extensions: 873
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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