Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0337
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...   177   1e-45
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...   175   4e-45
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   2.3  
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ...    27   2.3  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   3.0  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    26   5.2  

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score =  177 bits (431), Expect = 1e-45
 Identities = 87/159 (54%), Positives = 113/159 (71%)
 Frame = +1

Query: 97  LKGPAXVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGF 276
           +KGP  VLK+N + + ++++      +K   W GS+K  A +RT  S + NMI GVT+GF
Sbjct: 28  VKGPRGVLKQNLRRVDIELKKQG-NTIKFIVWHGSRKHNACIRTAYSIINNMIIGVTQGF 86

Query: 277 QYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEG 456
           +YKMR VYAHFPIN   TE  +++EIRNFLGE+  R +K  PGVTV  S   KDE+IIEG
Sbjct: 87  RYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIIIEG 146

Query: 457 NSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 573
           NSLE+VS SAA I+Q   V+NKDIRKFLDG+YVSE+  +
Sbjct: 147 NSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 17/38 (44%), Positives = 29/38 (76%)
 Frame = +3

Query: 21  KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGSSQKELQ 134
           + I  ++ + IP+G++V +K+RLVTVKGPRG  ++ L+
Sbjct: 3   RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLR 40


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score =  175 bits (426), Expect = 4e-45
 Identities = 85/157 (54%), Positives = 112/157 (71%)
 Frame = +1

Query: 103 GPAXVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQY 282
           GP   LK+N +H+ ++++      +K   W GS+K  A +R+V S + NMI GVT+GF+Y
Sbjct: 30  GPRGTLKQNLRHVDIEMKKQG-NTIKFIVWHGSRKHNACIRSVYSIINNMIIGVTQGFRY 88

Query: 283 KMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNS 462
           KMR VYAHFPIN   TE  +++EIRNFLGE+  R +K  PGVTV  S   KDE+I+EGNS
Sbjct: 89  KMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIILEGNS 148

Query: 463 LEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 573
           LE+VS SAA I+Q   V+NKDIRKFLDG+YVSE+  +
Sbjct: 149 LENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185



 Score = 37.9 bits (84), Expect = 0.001
 Identities = 16/38 (42%), Positives = 27/38 (71%)
 Frame = +3

Query: 21  KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGSSQKELQ 134
           + I  ++ + IP G+TV +K+R VTV GPRG+ ++ L+
Sbjct: 3   RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLR 40


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +1

Query: 418 NSPKQKDELIIEGNSLEDVSSSAALIQQS 504
           +SPK+K +L ++G  L+ +  + +LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277


>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/36 (27%), Positives = 24/36 (66%)
 Frame = +1

Query: 463 LEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTT 570
           + D+S+SA    + T + N+++ K  +GL+++ +T+
Sbjct: 78  MSDISNSACRASKITALNNRELYKDDNGLFITVQTS 113


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 130  FKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVT 267
            F H +VD+ +    L + E WF        + T+CS + N++  VT
Sbjct: 1594 FTHGSVDMLIEQNNLKQSEIWFVLNDFSLVLATICSCLGNLLNLVT 1639


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 576 HNSCFLRYIKTIQELSDILILD 511
           H S  L Y KT++E++ + I+D
Sbjct: 796 HQSSLLPYFKTLKEIAHLFIID 817


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,500,891
Number of Sequences: 5004
Number of extensions: 50586
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)