Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0337
         (632 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    202   1e-52
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   201   4e-52
03_06_0712 - 35683814-35684065,35685296-35685466                       27   9.4  

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  202 bits (494), Expect = 1e-52
 Identities = 95/163 (58%), Positives = 124/163 (76%), Gaps = 1/163 (0%)
 Frame = +1

Query: 97  LKGPAXVLKRNFKHLAVDIRMVNP-RLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKG 273
           ++GP   L RNFKHL +D +++   R L+V+ WFG+++ +AA+RT  SHV+N+I GVTKG
Sbjct: 27  VEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWFGTRRTMAAIRTAISHVQNLITGVTKG 86

Query: 274 FQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIE 453
           ++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M  GVT++ S K KDEL+++
Sbjct: 87  YRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLD 146

Query: 454 GNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLD 582
           GN +E VS SAALI Q   VKNKDIRKFLDG+YVS+K T+  D
Sbjct: 147 GNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTITED 189



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 18/41 (43%), Positives = 31/41 (75%)
 Frame = +3

Query: 18  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGSSQKELQTL 140
           MK I+A++ ++IP+G+TV V +++VTV+GPRG   +  + L
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHL 41


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  201 bits (490), Expect = 4e-52
 Identities = 95/165 (57%), Positives = 124/165 (75%), Gaps = 3/165 (1%)
 Frame = +1

Query: 97  LKGPAXVLKRNFKHLAVDIRMVNP---RLLKVEKWFGSKKELAAVRTVCSHVENMIKGVT 267
           ++GP   L RNFKHL +D +++     R L+V+ WFG+++ +AA+RT  SHV+N+I GVT
Sbjct: 18  VEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMAAIRTAISHVQNLITGVT 77

Query: 268 KGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELI 447
           KG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M  GVT++ S K KDEL+
Sbjct: 78  KGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELV 137

Query: 448 IEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLD 582
           ++GN +E VS SAALI Q   VKNKDIRKFLDG+YVS+K T+  D
Sbjct: 138 LDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTITED 182



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 15/32 (46%), Positives = 24/32 (75%)
 Frame = +3

Query: 45  VKIPDGLTVHVKSRLVTVKGPRGSSQKELQTL 140
           ++IP G+TVHV +++VTV+GPRG   +  + L
Sbjct: 1   MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHL 32


>03_06_0712 - 35683814-35684065,35685296-35685466
          Length = 140

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +1

Query: 115 VLKRNF-KHLAVDIRMVNPRLLKVE 186
           VLKR+F +  AVD+R +NP++ K E
Sbjct: 5   VLKRHFSRKRAVDVRRINPKVPKEE 29


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,863,136
Number of Sequences: 37544
Number of extensions: 319265
Number of successful extensions: 726
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)