Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0337
(632 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006679-6|AAK84469.1| 189|Caenorhabditis elegans Ribosomal pro... 214 4e-56
AC006633-1|AAK68374.1| 113|Caenorhabditis elegans Hypothetical ... 33 0.13
U10401-7|AAA19056.1| 504|Caenorhabditis elegans Hypothetical pr... 31 0.69
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical... 31 0.69
AL132860-13|CAB60509.1| 292|Caenorhabditis elegans Hypothetical... 28 4.8
U97593-2|AAY86241.1| 195|Caenorhabditis elegans Hypothetical pr... 28 6.4
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ... 28 6.4
Z68317-2|CAA92690.2| 980|Caenorhabditis elegans Hypothetical pr... 27 8.4
>AC006679-6|AAK84469.1| 189|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 9 protein.
Length = 189
Score = 214 bits (523), Expect = 4e-56
Identities = 96/161 (59%), Positives = 124/161 (77%)
Frame = +1
Query: 103 GPAXVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQY 282
GP ++++F+HL +++ + L+V KWFG +KELAA+RTVCSH++NMIKGVT GF+Y
Sbjct: 29 GPRGTIRKDFRHLHMEMERIGKSTLRVRKWFGVRKELAAIRTVCSHIKNMIKGVTVGFRY 88
Query: 283 KMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNS 462
KMR+VYAHFPIN +GN +EIRNFLGEK +RRV + GV S QKDE+++EGN
Sbjct: 89 KMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQKDEIVVEGND 148
Query: 463 LEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLDD 585
++ VS +AA IQQST VK KDIRKFLDG+YVSEKTT+V D
Sbjct: 149 VQFVSQAAARIQQSTAVKEKDIRKFLDGIYVSEKTTIVPTD 189
Score = 41.1 bits (92), Expect = 6e-04
Identities = 19/41 (46%), Positives = 28/41 (68%)
Frame = +3
Query: 18 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGSSQKELQTL 140
MK I +N V P+G+T VK+R+V V GPRG+ +K+ + L
Sbjct: 1 MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHL 41
>AC006633-1|AAK68374.1| 113|Caenorhabditis elegans Hypothetical
protein F35B3.3 protein.
Length = 113
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = -3
Query: 576 HNSCFLRYIKTIQELSDILILDCSRLLNESSRARDIFQR 460
+N+C LR IK + L+ +L + SRL N SR RD+F++
Sbjct: 25 NNNCKLRQIKPVPNLTRLL--EESRLTNSLSRLRDVFKK 61
>U10401-7|AAA19056.1| 504|Caenorhabditis elegans Hypothetical
protein T20B12.3 protein.
Length = 504
Score = 31.1 bits (67), Expect = 0.69
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -1
Query: 269 LVTPLIMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCL 132
L P +++ + ++++LT SFL H T+ F R+S +CL
Sbjct: 275 LTNPSLLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318
>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
protein Y47G6A.29 protein.
Length = 2460
Score = 31.1 bits (67), Expect = 0.69
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Frame = +1
Query: 136 HLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVC---SHVENMIKGVT--KGFQYKMRAVY 300
H+ D++++ + ++ WF ++L ++RT C S ++ I +T KGF + M+A +
Sbjct: 361 HVKHDVKIILTKETCMDIWFMRGEQLESIRTRCGPLSSLDMSILWITTEKGFYWNMKAEF 420
Query: 301 AHF 309
+F
Sbjct: 421 LNF 423
>AL132860-13|CAB60509.1| 292|Caenorhabditis elegans Hypothetical
protein Y56A3A.15 protein.
Length = 292
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 585 VI*HNSCFLRYIKTIQELSDILILDCSRLLNESSRARD 472
++ HN +L + KT L DIL+ +CS+ E + D
Sbjct: 180 ILTHNFYWLEFFKTKVTLDDILVSNCSKFSIEYNNLPD 217
>U97593-2|AAY86241.1| 195|Caenorhabditis elegans Hypothetical
protein C46G7.5 protein.
Length = 195
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = -1
Query: 299 YTARILYWKPLVTPLIMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCLKFLL 120
+T + Y K ++ P + S E ++T + FL + + R T+ MST+ L+ L+
Sbjct: 42 FTLQTYYSKKIILPKMDISRYELNLVTVSLFFLYFQSRNPAKARPQTLWMSTSPRLRELM 101
Query: 119 RTXAGPFNCHQ 87
+ NC +
Sbjct: 102 SIRSRRTNCSE 112
>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
protein D1007.15 protein.
Length = 1184
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = +1
Query: 262 VTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 399
++ F Y + +++ FPI C+ + I+ + +G Y+R V ++
Sbjct: 1085 LSSSFVYGLSSLWYEFPIKCLLWDAAVIVCLITQIGYSYLRGVHLS 1130
>Z68317-2|CAA92690.2| 980|Caenorhabditis elegans Hypothetical
protein T01H3.2 protein.
Length = 980
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 402 RCHLYPSDVFLTQEVTYLNN*ITLSGD-TVNGEVSIHSTHLVLEAF 268
RC L ++F + +T LNN + + GD +++ + S VL F
Sbjct: 477 RCQLMQGELFRSVNITILNNNLQIYGDNSLSKSIDTSSIKSVLPCF 522
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,843,172
Number of Sequences: 27780
Number of extensions: 288739
Number of successful extensions: 739
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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