Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0337
(632 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos... 190 9e-49
At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim... 189 2e-48
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil... 189 2e-48
At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identi... 28 5.9
At2g19500.1 68415.m02279 FAD-binding domain-containing protein /... 28 5.9
At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase fa... 27 7.8
>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
ribosomal protein L9, cytosolic - garden pea,
PIR2:S19978
Length = 194
Score = 190 bits (462), Expect = 9e-49
Identities = 91/169 (53%), Positives = 120/169 (71%), Gaps = 5/169 (2%)
Frame = +1
Query: 94 QLKGPAXVLKRNFKHLAVDIRMVNP-----RLLKVEKWFGSKKELAAVRTVCSHVENMIK 258
+++GP L R+FKHL +D +++ R LK++ WFGS+K A++RT SHV+N+I
Sbjct: 26 EVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKIDSWFGSRKTSASIRTALSHVDNLIA 85
Query: 259 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 438
GVT+GF Y+MR VYAHFPIN N IEIRNFLGEK +R+V+M GV +V S K KD
Sbjct: 86 GVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKVRKVEMLDGVKIVRSEKVKD 145
Query: 439 ELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLDD 585
E+I+EGN +E VS S ALI Q VK KDIRKFLDG+YVSEK + +++
Sbjct: 146 EIILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGKIAVEE 194
Score = 38.7 bits (86), Expect = 0.003
Identities = 14/41 (34%), Positives = 29/41 (70%)
Frame = +3
Query: 18 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGSSQKELQTL 140
MK I++++ + IPDG+ + V ++++ V+GPRG ++ + L
Sbjct: 1 MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHL 41
>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
[Arabidopsis thaliana]
Length = 194
Score = 189 bits (460), Expect = 2e-48
Identities = 89/169 (52%), Positives = 122/169 (72%), Gaps = 5/169 (2%)
Frame = +1
Query: 94 QLKGPAXVLKRNFKHLAVDIRMVNP-----RLLKVEKWFGSKKELAAVRTVCSHVENMIK 258
+++GP L R+FKHL +D +++ + LK++ WFG++K A++RT SHV+N+I
Sbjct: 26 EVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKIDSWFGTRKTSASIRTALSHVDNLIS 85
Query: 259 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 438
GVT+GF+YKMR VYAHFPIN IEIRNFLGEK +R+V+M GVT+V S K KD
Sbjct: 86 GVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKD 145
Query: 439 ELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLDD 585
E++++GN +E VS S ALI Q VK KDIRKFLDG+YVSEK+ +V ++
Sbjct: 146 EIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKSKIVEEE 194
Score = 37.5 bits (83), Expect = 0.007
Identities = 14/41 (34%), Positives = 29/41 (70%)
Frame = +3
Query: 18 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGSSQKELQTL 140
MK I++++ + IPD +T+ V ++++ V+GPRG ++ + L
Sbjct: 1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHL 41
>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
thaliana]
Length = 194
Score = 189 bits (460), Expect = 2e-48
Identities = 89/169 (52%), Positives = 122/169 (72%), Gaps = 5/169 (2%)
Frame = +1
Query: 94 QLKGPAXVLKRNFKHLAVDIRMVNP-----RLLKVEKWFGSKKELAAVRTVCSHVENMIK 258
+++GP L R+FKHL +D +++ + LK++ WFG++K A++RT SHV+N+I
Sbjct: 26 EVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKIDSWFGTRKTSASIRTALSHVDNLIS 85
Query: 259 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 438
GVT+GF+YKMR VYAHFPIN IEIRNFLGEK +R+V+M GVT+V S K KD
Sbjct: 86 GVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKD 145
Query: 439 ELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLDD 585
E++++GN +E VS S ALI Q VK KDIRKFLDG+YVSEK+ +V ++
Sbjct: 146 EIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKSKIVEEE 194
Score = 37.5 bits (83), Expect = 0.007
Identities = 14/41 (34%), Positives = 29/41 (70%)
Frame = +3
Query: 18 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGSSQKELQTL 140
MK I++++ + IPD +T+ V ++++ V+GPRG ++ + L
Sbjct: 1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHL 41
>At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identical
to CLC-d chloride channel protein [Arabidopsis thaliana]
GI:1742959
Length = 792
Score = 27.9 bits (59), Expect = 5.9
Identities = 20/71 (28%), Positives = 35/71 (49%)
Frame = +1
Query: 310 PINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAA 489
P V E S+ ++ N + +R + + P + V + +L+IE N SSA
Sbjct: 706 PSPYVVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVIGLITRKDLLIEENG----ESSAV 761
Query: 490 LIQQSTTVKNK 522
+QQST+V+ +
Sbjct: 762 ELQQSTSVRGR 772
>At2g19500.1 68415.m02279 FAD-binding domain-containing protein /
cytokinin oxidase family protein similar to cytokinin
oxidase, Zea mays [SP|Q9T0N8] [gi:3441978]
Length = 501
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = -1
Query: 455 PSMISS-SFCFGELTTVTPGAI 393
PS+IS+ S FG +TTVTPG +
Sbjct: 39 PSIISAASHDFGNITTVTPGGV 60
>At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from {Mus
musculus} SP|P70704, {Bos taurus} SP|Q29449; contains
InterPro accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 1107
Score = 27.5 bits (58), Expect = 7.8
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +1
Query: 367 GEKYIRRVKMAPGVTVVNSPKQKDELI-IEGNSLEDVSSS---AALIQQSTTVKNKDIRK 534
G+K +++A + SP+ K +L+ I+G + EDVS S L + T + KD+
Sbjct: 637 GDKQNTAIQIALSCNFI-SPEPKGQLLMIDGKTEEDVSRSLERVLLTMRITASEPKDVAF 695
Query: 535 FLDG 546
+DG
Sbjct: 696 VIDG 699
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,053,348
Number of Sequences: 28952
Number of extensions: 264311
Number of successful extensions: 645
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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