Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0335
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces po...    28   1.5  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    27   2.6  
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom...    27   2.6  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    26   4.5  
SPBC17A3.02 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.9  

>SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 439

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +3

Query: 36  EEKRTKSCSPSPEIKSTAVVKYTAFQSPVGYARLQCNTDLNMPPSNWGAA 185
           E+ R   C+ +   + T  VK   +  PV        + ++  P NWGAA
Sbjct: 5   EQSRPAECNGAHAHEKTEEVKKPLYSRPVVLTTYPSQSRIDPFPMNWGAA 54


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 247 WLTCSRTVWVRSMSYLV 297
           WL C   VWVR M  LV
Sbjct: 606 WLECKEKVWVRRMKILV 622


>SPBC17D1.02 |||diphthamide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 503

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 468 KTMSEQERTLLRLGPASSALTHKFLSH 548
           K++S Q+ TLL +GP S  L+   +SH
Sbjct: 207 KSLSLQDMTLLYIGPDSPTLSSILMSH 233


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = -3

Query: 308 DTFSTRYDIDLTHTVREHVSHSKTG*PCASSQDLLKSVGVDGCSPVRRWHV 156
           D+F   +D+ + H V  HV H         S D  + +     S V+ W +
Sbjct: 194 DSFMKLWDLSIQHCVETHVDHQGEIWAMCVSPDAKRCLTAGTGSDVKVWEI 244


>SPBC17A3.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 119

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +1

Query: 265 TVWVRSMSYLVLNVSRNCSSYLINPMAL 348
           T W  S++YL++N +++  S+ + P+AL
Sbjct: 75  TAW--SIAYLMINATKSIKSFRLYPIAL 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,453,282
Number of Sequences: 5004
Number of extensions: 43430
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)