Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0335
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873...    30   1.5  
07_03_1312 - 25699811-25699912,25700410-25700548,25700655-257007...    29   3.5  
03_03_0198 + 15361048-15361746,15361854-15361946,15362035-153621...    28   6.2  
03_02_0436 + 8427018-8427707,8429005-8429544                           28   6.2  
11_01_0594 - 4731112-4731444                                           28   8.2  
07_01_0006 - 44544-44697,44739-44847,45076-45154                       28   8.2  

>01_06_1513 -
           37884198-37884485,37884966-37886951,37886976-37887305,
           37887397-37887471,37887543-37887734,37887922-37888173,
           37888248-37888803,37888881-37889088,37889624-37889736,
           37890029-37890060,37890545-37890619
          Length = 1368

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = +3

Query: 276 EVDVISGAECIKKLLKLPYQPNGTVSMMVHRVENT 380
           E+DV++  + +K++ K+PY     VS+ V+R+ +T
Sbjct: 104 EIDVVAPTDILKQIFKIPYS-KAQVSIAVNRIGDT 137


>07_03_1312 -
           25699811-25699912,25700410-25700548,25700655-25700722,
           25700803-25700895,25706303-25706902
          Length = 333

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +3

Query: 180 AAIDSYGLKQILTRGT---GLSSFRMAHMFPDCVGEVDVISGAECIKK 314
           AA+D+ G+ +    G    G   +RMA M+PD V  V ++    C+++
Sbjct: 126 AAMDAIGVARFGLVGVSYGGFVGYRMAAMYPDAVERVVLVCAGVCLEE 173


>03_03_0198 +
           15361048-15361746,15361854-15361946,15362035-15362102,
           15362255-15362393,15362481-15362483
          Length = 333

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +3

Query: 180 AAIDSYGLKQILTRGT---GLSSFRMAHMFPDCVGEVDVISGAECIKK 314
           AA+D+ G+++    G    G  ++RMA M+P+ V    ++    C+++
Sbjct: 133 AAMDAIGVRRFDVVGVSYGGFVAYRMAAMYPEAVDRAVMVCAGVCLEE 180


>03_02_0436 + 8427018-8427707,8429005-8429544
          Length = 409

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 603 HHRSVSPGTGDQARXAPYLXPVPPE 677
           HH ++  G G Q+   P L P+PP+
Sbjct: 94  HHHNLGGGGGQQSPFFPLLPPLPPQ 118


>11_01_0594 - 4731112-4731444
          Length = 110

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
 Frame = +3

Query: 261 PDCVGEVDVISGAECIKKLLKLPYQPNGTVSMMVHRVENTXXXXXXXXXXXXMKSEWSWL 440
           P   GE  VIS +   K  L LP  P+G+ S  V   +              +  E S  
Sbjct: 23  PVLSGEEQVISSSSSPKPPLMLPQAPSGSGSGGVESSDMGDENEQLRWEDVQLARELSQT 82

Query: 441 KDFFYENILKTMSEQ-ERTLLRLGPAS 518
           +   Y NIL  MS+  +  LLR  P+S
Sbjct: 83  RK-LYNNILPLMSKYFDIELLRGAPSS 108


>07_01_0006 - 44544-44697,44739-44847,45076-45154
          Length = 113

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -1

Query: 265 SGNM*AIRKLDSPVPLVKICLSP*ESMAAPQLDGGMLRSVLHCRRAYPTGLWNA 104
           S N   + + D  VPL  I  SP  S  +    G +L+  L  +RA+  G W A
Sbjct: 24  SRNAVPLPEQDRLVPLAAIVESPSNSSTSDLSVGKVLQVYLRTQRAWKMGWWGA 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,179,802
Number of Sequences: 37544
Number of extensions: 320067
Number of successful extensions: 839
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)