Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0335
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52111| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   2e-05
SB_11016| Best HMM Match : DUF726 (HMM E-Value=1.3e-08)                29   2.7  
SB_59791| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_16469| Best HMM Match : EGF (HMM E-Value=4e-09)                     28   6.3  
SB_6446| Best HMM Match : DENN (HMM E-Value=2.2)                       28   6.3  
SB_45095| Best HMM Match : DUF1168 (HMM E-Value=0.74)                  28   8.4  

>SB_52111| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = +3

Query: 9   EMEEADNNNEEKRTKSCSPSPEIKSTAVVKYTAFQSPV-GYARLQCNTDLNMPPSNW 176
           E + +D  +E+      S   ++ STA+VKYT+F  PV  Y RL  +T+LN+ P+NW
Sbjct: 100 ERDASDAISEQSEDDQQSEKMKVHSTAIVKYTSFAPPVLPYWRLSQDTNLNIAPANW 156


>SB_11016| Best HMM Match : DUF726 (HMM E-Value=1.3e-08)
          Length = 442

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 15  EEADNNNEEKRTKSCSPSPEIKSTAVVKYTAFQSPVGYARLQCNTDLNMPPS 170
           E  D + EEK+    SPSP      V+K         YARL C   + + P+
Sbjct: 5   ERCDCDIEEKQKNGESPSPTSAEDPVLKALTISGRSAYARLCCLILIGLYPT 56


>SB_59791| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 15  EEADNNNEEKRTKSCSPSPEIKSTAVVKYTAFQSPVGYARLQCNTDLNMPPS 170
           E  D + EEK+    SPSP      V+K         YARL C   + + P+
Sbjct: 5   ERCDCDIEEKQKNGESPSPTSAEDPVLKALTISGRSAYARLCCLILIGLYPT 56


>SB_16469| Best HMM Match : EGF (HMM E-Value=4e-09)
          Length = 902

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
 Frame = -2

Query: 549 CATGTC-GSARCSPGPGGATCAPVQT 475
           C   TC     C+  PGG +CAP  T
Sbjct: 248 CTNDTCFPGVNCTETPGGVSCAPTTT 273


>SB_6446| Best HMM Match : DENN (HMM E-Value=2.2)
          Length = 492

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = -1

Query: 220 LVKICLSP*ESMAAPQLDGGMLRSVLHCRRAYPTGLWNAVYFTTAVDLI 74
           L+ +C  P   M AP       R++LH R  +PT L +A Y+T A +L+
Sbjct: 100 LLHLCTHPTTLMHAPYYT--YARTLLHLR-THPTTLMHAPYYTYARNLL 145


>SB_45095| Best HMM Match : DUF1168 (HMM E-Value=0.74)
          Length = 604

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +3

Query: 420 KSEWSWLKDF-FYENILKTMSE 482
           ++EWSWLKD   YE IL    E
Sbjct: 223 QTEWSWLKDIELYEEILSRKPE 244


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,380,449
Number of Sequences: 59808
Number of extensions: 360546
Number of successful extensions: 985
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)