Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0335
         (700 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT030123-1|ABN49262.1| 1211|Drosophila melanogaster IP13783p pro...   135   6e-32
AE014296-1508|AAF50376.2| 1211|Drosophila melanogaster CG6511-PA...   135   6e-32
BT004480-1|AAO42644.1|  787|Drosophila melanogaster LD47550p pro...    30   3.5  
AE013599-943|AAF58888.1|  787|Drosophila melanogaster CG1671-PA ...    30   3.5  

>BT030123-1|ABN49262.1| 1211|Drosophila melanogaster IP13783p
           protein.
          Length = 1211

 Score =  135 bits (326), Expect = 6e-32
 Identities = 75/187 (40%), Positives = 102/187 (54%), Gaps = 10/187 (5%)
 Frame = +3

Query: 24  DNNNEEKRTKSCSPSP--EIKSTAVVKYTAFQSPVGYARLQCNTDLNMPPSNW-GAAIDS 194
           D N E +  +S  P     +KS AV+K +    P  + RL+CNT+LN+PP NW   +  S
Sbjct: 3   DRNEEIEPCRSIGPHELDVVKSQAVIKLSPVPVPAHFKRLECNTNLNLPPLNWLTTSHSS 62

Query: 195 YGLKQILTRGTGLSSFRMAHMFPDCVGEVDVISGAECIKKLLKLPYQPNGTVSMMVHRVE 374
           +GL Q L +  G +SFR+  MFPDCVGEVDV+S AE IK+LLKLPY     +SM+VH+V 
Sbjct: 63  HGLHQALYQSAGFASFRLGQMFPDCVGEVDVVSDAENIKQLLKLPYSAKSAISMVVHKVG 122

Query: 375 NTXXXXXXXXXXXXMK---SEWSWLKDFFYENILKTMSEQERTLL----RLGPASSALTH 533
           NT            ++    +W WL+ F  E++L     Q    L    R    +  L  
Sbjct: 123 NTLLLDEFDIQKYLLRKADDDWKWLRSFILEHVLTYGDTQHNYCLKERSREALQTKNLLS 182

Query: 534 KFLSHSV 554
           KFL HS+
Sbjct: 183 KFLYHSL 189


>AE014296-1508|AAF50376.2| 1211|Drosophila melanogaster CG6511-PA
           protein.
          Length = 1211

 Score =  135 bits (326), Expect = 6e-32
 Identities = 75/187 (40%), Positives = 102/187 (54%), Gaps = 10/187 (5%)
 Frame = +3

Query: 24  DNNNEEKRTKSCSPSP--EIKSTAVVKYTAFQSPVGYARLQCNTDLNMPPSNW-GAAIDS 194
           D N E +  +S  P     +KS AV+K +    P  + RL+CNT+LN+PP NW   +  S
Sbjct: 3   DRNEEIEPCRSIGPHELDVVKSQAVIKLSPVPVPAHFKRLECNTNLNLPPLNWLTTSHSS 62

Query: 195 YGLKQILTRGTGLSSFRMAHMFPDCVGEVDVISGAECIKKLLKLPYQPNGTVSMMVHRVE 374
           +GL Q L +  G +SFR+  MFPDCVGEVDV+S AE IK+LLKLPY     +SM+VH+V 
Sbjct: 63  HGLHQALYQSAGFASFRLGQMFPDCVGEVDVVSDAENIKQLLKLPYSAKSAISMVVHKVG 122

Query: 375 NTXXXXXXXXXXXXMK---SEWSWLKDFFYENILKTMSEQERTLL----RLGPASSALTH 533
           NT            ++    +W WL+ F  E++L     Q    L    R    +  L  
Sbjct: 123 NTLLLDEFDIQKYLLRKADDDWKWLRSFILEHVLTYGDTQHNYCLKERSREALQTKNLLS 182

Query: 534 KFLSHSV 554
           KFL HS+
Sbjct: 183 KFLYHSL 189


>BT004480-1|AAO42644.1|  787|Drosophila melanogaster LD47550p
           protein.
          Length = 787

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 20/46 (43%), Positives = 26/46 (56%)
 Frame = -3

Query: 290 YDIDLTHTVREHVSHSKTG*PCASSQDLLKSVGVDGCSPVRRWHVE 153
           YD +     +  V HS T    A+SQ+LL SVG D CS VR W ++
Sbjct: 365 YDTEHDMNCKLIVGHSDTVMSLAASQNLLISVGKD-CS-VRLWRLQ 408


>AE013599-943|AAF58888.1|  787|Drosophila melanogaster CG1671-PA
           protein.
          Length = 787

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 20/46 (43%), Positives = 26/46 (56%)
 Frame = -3

Query: 290 YDIDLTHTVREHVSHSKTG*PCASSQDLLKSVGVDGCSPVRRWHVE 153
           YD +     +  V HS T    A+SQ+LL SVG D CS VR W ++
Sbjct: 365 YDTEHDMNCKLIVGHSDTVMSLAASQNLLISVGKD-CS-VRLWRLQ 408


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,453,287
Number of Sequences: 53049
Number of extensions: 539614
Number of successful extensions: 1474
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1472
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)