Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0335
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82266-1|CAB05178.2|  626|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AC025721-10|AAK29908.2| 1019|Caenorhabditis elegans Hypothetical...    27   9.8  

>Z82266-1|CAB05178.2|  626|Caenorhabditis elegans Hypothetical
           protein F23B2.3 protein.
          Length = 626

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = +3

Query: 63  PSPEIKSTAVVKYTAFQSPVGYARLQCNTDLNMPPSNWGAAIDS--YGLKQIL--TRGTG 230
           P   I + A  +YT   + V Y+ +     + +PP++WG   +   YG++  L  T G  
Sbjct: 309 PKDTIPNLASDEYTVSPNSVAYSAISKFRYVLLPPNDWGNCTEDYPYGIQSNLSYTSGNC 368

Query: 231 LSSFRMAHMFPDC 269
           LS  +  +    C
Sbjct: 369 LSLCKAKYFMNQC 381


>AC025721-10|AAK29908.2| 1019|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.1 protein.
          Length = 1019

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 288 ISGAECIKKLLKLPYQPNGTVSMMVHRVEN 377
           + G EC++ LL LP+ P  T ++ V  ++N
Sbjct: 478 LKGIECLRVLLMLPWLPIFTENVNVQTIKN 507


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,159,330
Number of Sequences: 27780
Number of extensions: 264128
Number of successful extensions: 728
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)