Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0335
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g35660.1 68414.m04432 expressed protein                             30   1.3  
At5g11220.1 68418.m01311 expressed protein                             29   2.2  
At4g31090.1 68417.m04413 expressed protein                             29   3.9  
At4g28706.3 68417.m04105 pfkB-type carbohydrate kinase family pr...    28   6.8  
At4g28706.2 68417.m04104 pfkB-type carbohydrate kinase family pr...    28   6.8  
At4g28706.1 68417.m04103 pfkB-type carbohydrate kinase family pr...    28   6.8  
At2g20770.1 68415.m02441 lanthionine synthetase C-like family pr...    28   6.8  
At4g14390.1 68417.m02219 ankyrin repeat family protein contains ...    27   9.0  

>At1g35660.1 68414.m04432 expressed protein
          Length = 1155

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 276 EVDVISGAECIKKLLKLPYQPNGTVSMMVHRVENT 380
           E+DVI+  + +K++ K+PY     VS+ V RV  T
Sbjct: 143 EIDVIAPVDILKQIFKIPYS-KARVSIAVQRVGQT 176


>At5g11220.1 68418.m01311 expressed protein
          Length = 265

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 429 WSWLKDFFYENILKTM 476
           W WL+DFF +NIL T+
Sbjct: 4   WFWLEDFFSQNILSTI 19


>At4g31090.1 68417.m04413 expressed protein
          Length = 250

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 3   IIEMEEADNNNEEKRTKSCSPSPEIKSTAVVKYTAFQS 116
           +IE  E  N++     +  SP+PEIK  A +  T   S
Sbjct: 213 LIETSEVVNSSSSSSERGSSPTPEIKEEAAITETGTPS 250


>At4g28706.3 68417.m04105 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 403

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 127 MLVYSVTPISTCHRLTGEQPSTPTDLSRS 213
           +LV + T   TC    G+ P  PTDLS+S
Sbjct: 144 ILVDNQTKTRTCIHTPGDPPMLPTDLSQS 172


>At4g28706.2 68417.m04104 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 404

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 127 MLVYSVTPISTCHRLTGEQPSTPTDLSRS 213
           +LV + T   TC    G+ P  PTDLS+S
Sbjct: 144 ILVDNQTKTRTCIHTPGDPPMLPTDLSQS 172


>At4g28706.1 68417.m04103 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 401

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 127 MLVYSVTPISTCHRLTGEQPSTPTDLSRS 213
           +LV + T   TC    G+ P  PTDLS+S
Sbjct: 142 ILVDNQTKTRTCIHTPGDPPMLPTDLSQS 170


>At2g20770.1 68415.m02441 lanthionine synthetase C-like family
           protein contains Pfam domain, PF05147: Lanthionine
           synthetase C-like protein
          Length = 405

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 252 HMFPDCVGEVDVISGAECIKKLLKLPY 332
           ++ PD V E + +SG + ++ LL +PY
Sbjct: 8   NVMPDFVKEKESVSGGDTLRNLLAMPY 34


>At4g14390.1 68417.m02219 ankyrin repeat family protein contains
           Pfam profile: PF00023 ankyrin repeat
          Length = 694

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +1

Query: 37  KRRELSLAVPRQRSNQQQW*STLHSRVQWGMLVYSVTPISTCHRLTGEQPST 192
           K R   ++V R +SN     S LH  V WG L      +  C RL  EQ S+
Sbjct: 116 KLRSRGISVARIKSNTGD--SILHLAVTWGHLELVKEIVCECPRLLLEQNSS 165


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,309,004
Number of Sequences: 28952
Number of extensions: 243461
Number of successful extensions: 620
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)