Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0333
(800 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46525| Best HMM Match : Thymosin (HMM E-Value=0) 99 4e-21
SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9) 36 0.038
SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21) 33 0.36
SB_52732| Best HMM Match : M (HMM E-Value=0.019) 32 0.62
SB_32651| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.62
SB_10018| Best HMM Match : Sas10_Utp3 (HMM E-Value=7.6e-35) 32 0.62
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26) 31 0.82
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 31 0.82
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91) 30 2.5
SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23) 30 2.5
SB_13773| Best HMM Match : TolA (HMM E-Value=0.042) 29 3.3
SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14) 29 5.8
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032) 29 5.8
SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0) 29 5.8
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11) 28 7.7
SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7) 28 7.7
SB_16625| Best HMM Match : Death (HMM E-Value=1.5) 28 7.7
>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
Length = 750
Score = 99.1 bits (236), Expect = 4e-21
Identities = 54/126 (42%), Positives = 78/126 (61%), Gaps = 2/126 (1%)
Frame = +3
Query: 78 PSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFD--GIEKF 251
PS +D+ + A D +++++ F+ S L+ V+T EK LPSA + E + L D + F
Sbjct: 627 PSQEDIKEEAVDSRAEVKSFDHSKLKHVETVEKNPLPSAAVLKEEMRPEVLPDVSAVASF 686
Query: 252 DSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVI 431
D+S+LKH E QEKNPLP KD I E + + ++ FD +KLKH +T EKNPLP I
Sbjct: 687 DASKLKHVEVQEKNPLPTKDDITTESTETR--AEVKTFDHSKLKHVQTEEKNPLPDAKTI 744
Query: 432 EQEKSA 449
QEK++
Sbjct: 745 AQEKAS 750
Score = 92.7 bits (220), Expect = 3e-19
Identities = 50/110 (45%), Positives = 69/110 (62%), Gaps = 2/110 (1%)
Frame = +3
Query: 117 KSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNP 296
+++++ F S L+ V+T EK LP+ + +A EK + + F G+E F ++LKH ET EKNP
Sbjct: 451 RAEVKSFEKSKLQHVETKEKNTLPTKDTIADEK-RTAPFSGVEVFQKNKLKHVETLEKNP 509
Query: 297 LPDKDAIEAE--KEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 440
LPD I AE E + + FD +KLKH ET EK +PTKDVIE E
Sbjct: 510 LPDAQNIRAEMMPEVLPDRSEVAKFDTSKLKHVETKEKVVMPTKDVIEAE 559
Score = 84.6 bits (200), Expect = 8e-17
Identities = 48/109 (44%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Frame = +3
Query: 120 SQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIE--KFDSSQLKHTETQEKN 293
S +E F + L+ V+T EK LP A+++ E + L D E KFD+S+LKH ET+EK
Sbjct: 489 SGVEVFQKNKLKHVETLEKNPLPDAQNIRAEMMPEVLPDRSEVAKFDTSKLKHVETKEKV 548
Query: 294 PLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 440
+P KD IEAE ++ +++FD +KLKH T EKNPLPT + +E
Sbjct: 549 VMPTKDVIEAEAIDSRA--EVKSFDHSKLKHVVTQEKNPLPTPQTLHEE 595
Score = 82.2 bits (194), Expect = 4e-16
Identities = 46/118 (38%), Positives = 73/118 (61%), Gaps = 2/118 (1%)
Frame = +3
Query: 93 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKH 272
+P+V D +S++ F+TS L+ V+T EK+V+P+ + + E ++ FD S+LKH
Sbjct: 521 MPEVLPD-RSEVAKFDTSKLKHVETKEKVVMPTKDVIEAEAIDSRA--EVKSFDHSKLKH 577
Query: 273 TETQEKNPLPDKDAIEAEK-EKNK-FLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 440
TQEKNPLP + E KNK + + +FD TKLKH T EK+ +P+++ I++E
Sbjct: 578 VVTQEKNPLPTPQTLHEELIPKNKPDRSEVASFDHTKLKHVTTQEKSIMPSQEDIKEE 635
Score = 72.9 bits (171), Expect = 3e-13
Identities = 38/96 (39%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
Frame = +3
Query: 162 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNK 341
DT ++I P +E + K + KFD++ LKH +T+EKN LP + I+ E + ++
Sbjct: 389 DTPQQI-WPGSEVAYVDGGSKPDVSEVAKFDAANLKHVQTKEKNTLPSDETIKQELQPDE 447
Query: 342 FLN--GIENFDPTKLKHTETCEKNPLPTKDVIEQEK 443
F + +++F+ +KL+H ET EKN LPTKD I EK
Sbjct: 448 FPDRAEVKSFEKSKLQHVETKEKNTLPTKDTIADEK 483
>SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)
Length = 413
Score = 35.9 bits (79), Expect = 0.038
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +3
Query: 81 SLKDLPKVATDLKSQLEGFNTSCL-RDVDTNEKIVLPSAEDVATEKTQKSLFD 236
SLK L K+ TDL+S ++G ++ L ++V+ K+V + +T K + S F+
Sbjct: 333 SLKALAKICTDLESNIQGIKSNPLAKEVERTNKLVYEIFKKFSTSKVEASSFE 385
>SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21)
Length = 900
Score = 32.7 bits (71), Expect = 0.36
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +3
Query: 156 DVDTNEKIVLPSAEDVATEKTQKSLFDG-IEKFDSSQLKHTETQEKNPLPDKDAIEAEKE 332
DV + P+ A EKT K + DG +EK+ + +T + L D D E+E
Sbjct: 341 DVIGKPPAIPPAQVQAAEEKTPKDIIDGLLEKYKEIGSQMADTSADDGLDDDD---VEEE 397
Query: 333 KNKFLNGIENFDPTKLK 383
+ L+ + F TK K
Sbjct: 398 DDDVLDEADRFRDTKRK 414
>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
Length = 1366
Score = 31.9 bits (69), Expect = 0.62
Identities = 21/75 (28%), Positives = 31/75 (41%)
Frame = +3
Query: 84 LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQ 263
L DL +V +LKS+ EG CL D++ + DV E I + + +
Sbjct: 1125 LMDLSRVGEELKSENEGLQQKCL-DLEKQRDTIKQDLADVQKEHENLKSAVSISEGELLK 1183
Query: 264 LKHTETQEKNPLPDK 308
K+T EK K
Sbjct: 1184 FKNTLQSEKEEFEKK 1198
>SB_32651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 725
Score = 31.9 bits (69), Expect = 0.62
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Frame = +3
Query: 189 SAEDVATEKTQ--KSLF--DGIE-KFDSSQLKHTETQEKNPLPDKDAIEAEK-----EKN 338
S+E+VA KT+ +SL D ++ K+ SSQ+ ET++ K ++E+ EK
Sbjct: 142 SSEEVAKWKTKLRRSLSKTDALDGKYSSSQIDKLETKQAIKSKKKKRRKSEEKELLGEKV 201
Query: 339 KFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEK 443
N +N + TK +H++ EKN Q+K
Sbjct: 202 DQFNSKKNLNRTKERHSKKMEKNRQDNSKTRSQQK 236
>SB_10018| Best HMM Match : Sas10_Utp3 (HMM E-Value=7.6e-35)
Length = 430
Score = 31.9 bits (69), Expect = 0.62
Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Frame = +3
Query: 63 SVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDT----NEKIVLPSAEDVATEKTQ-KS 227
SV D P + + ++ T +K +LE ++ D++T ++ LP+A V T+K+ K
Sbjct: 218 SVKDHPVIARIVQLRTLIK-ELEPTDSRLEEDIETLLAMHKNGELPNASMVQTKKSNLKV 276
Query: 228 LFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNK 341
+ + S + KHT+ ++ +PL + ++ +K K K
Sbjct: 277 KLNMRHQAKSKKRKHTDKEDIDPLAYYEEVKMKKMKAK 314
>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
Length = 1064
Score = 31.5 bits (68), Expect = 0.82
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 11 ESSIPFVIKNILIQNGLLRE*HSLPERPPQGRHRPEESARRLQHQ 145
E S+PF N QN ++ +P R PQG H + A+ +QH+
Sbjct: 224 EMSLPFKKHNTFRQNVDIK---GIPSRLPQGEHSDRKKAQEVQHK 265
>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
Length = 1452
Score = 31.5 bits (68), Expect = 0.82
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = +3
Query: 249 FDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDV 428
+D Q K E PD+D +E E+E NG+E+ D K + PT DV
Sbjct: 839 YDVKQRKRLEQHASYEAPDEDEMEIERE---LQNGLESGDEDDTKADAQRSETNSPTLDV 895
Query: 429 IEQE 440
Q+
Sbjct: 896 ETQQ 899
>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
Length = 1249
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 63 SVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDV-DTNEKIVLPSAEDVAT 209
S SD P+ D A+D+KS + T DV T++ V PSA DV T
Sbjct: 617 SASDVPTTSDDQPSASDVKSTSDDQVTPPSSDVPTTSDDQVTPSASDVPT 666
>SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23)
Length = 385
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +3
Query: 183 LPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLP 302
L S D EKT D +E+F S +H T +KNPLP
Sbjct: 194 LSSRSDHVQEKT-----DRLEQFSSQTGRHINTTKKNPLP 228
>SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)
Length = 1558
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Frame = +3
Query: 150 LRDVDTNEKIVLPSAEDV------ATEKTQKSLFDGIEKFDS---SQLKHTETQEKNPLP 302
++D+ T E+++ AED A E ++++F+ EK +S + + TE Q+K
Sbjct: 1137 MKDLTTEEELIASYAEDAERAAEAAKEYRERTMFEIAEKINSIKEQRRQQTEAQKKKMDE 1196
Query: 303 DKDAIEAEKEKNK 341
+ +EAE E+ +
Sbjct: 1197 EIRRLEAELEEER 1209
>SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1028
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 513 LM*VRSICVVHYKFYFCFCTMATLPG 590
L+ V IC VH FY+C C +++ G
Sbjct: 55 LVAVLRICSVHLDFYYCTCVWSSMAG 80
>SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 267 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEK 404
+HTE + +P P K I+ E +++ + I+ KH+ +CE+
Sbjct: 212 RHTENAKSSPDPIKSEIDGEHSEDEKEHKIKVCPLVDKKHSHSCER 257
>SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14)
Length = 966
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 287 EEPASGQRRYRSGEGKEQIPERHRELRSH*AEAHGDVRKEP 409
EEP+ + +G KE+ E RE R H + V++EP
Sbjct: 840 EEPSDEEESEEAGREKEEEEEDQREGRDHNDDEESVVKEEP 880
>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2916
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +2
Query: 233 RRYREV*FEPAEAHRDSGEEPASGQRRYRSGEGKEQIPERHRELRS 370
RR +E+ AE H+ EPA + R+ SGE E+ H E++S
Sbjct: 35 RREQEIIELKAELHKRDDLEPAGQRHRHDSGESFEE----HEEIKS 76
>SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)
Length = 1293
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +2
Query: 233 RRYREV*FEPAEAHRDSGEEPASGQRRYRSGEGKEQIPERHRELRS 370
RR +E+ AE H+ EPA + R+ SGE E+ H E++S
Sbjct: 11 RREQEIIELKAELHKRDDLEPAGQRHRHDSGESFEE----HEEIKS 52
>SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)
Length = 644
Score = 28.7 bits (61), Expect = 5.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 470 VTRKCISLVSPYFNIDVSQIDL 535
+ KC L+SPY ++D+ DL
Sbjct: 13 IAAKCTQLISPYLDLDIKYFDL 34
>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
Length = 3037
Score = 28.3 bits (60), Expect = 7.7
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
Frame = +3
Query: 81 SLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSS 260
SL D ++ S+L S LR +D+N + + S D E +K L +
Sbjct: 1409 SLSDKRPAPMNITSRLS--KISPLRALDSNAECAVSSDSDSELEDEKKPLASFCSQVKMH 1466
Query: 261 QLKHTETQEKNPLPDKDAIEAEKEKNKF-LNGIENFDPTKLKHTETCEKN 407
+ K + + LP++ A + KN+ + N L+ ++T EK+
Sbjct: 1467 KTKEQQCNVEKTLPEESAQKRTFVKNRTDMASSLNIRRRHLEDSKTLEKS 1516
>SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7)
Length = 446
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +3
Query: 222 KSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHT--ET 395
KS+F + + + TET+E NP D +AE+ + G + T+ K T ET
Sbjct: 276 KSVFKRNRPTEPASVPSTETKEANPNVTADTKQAEQNEGSMSEGTTSKTITENKTTNMET 335
Query: 396 CEKNPL 413
K L
Sbjct: 336 LRKEML 341
>SB_16625| Best HMM Match : Death (HMM E-Value=1.5)
Length = 528
Score = 28.3 bits (60), Expect = 7.7
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Frame = +3
Query: 204 ATEKTQKSLFDGIEKFDSSQLKHTE-----------TQEKNPLPDKDAIEAEKEKNKFLN 350
A T L DG+ D ++ +H + T E++P DK + L+
Sbjct: 226 ALRDTTHDLLDGLRYSDQAKEEHAKLIPKYHEIMIKTIEQDPTSDKSYKALRDTTHDLLD 285
Query: 351 GIENFDPTKLKHTETCEKNPLPTKDVIEQEKSA 449
G+ +FD K +H + K IEQ+ ++
Sbjct: 286 GLRDFDQAKEEHAKLIPKYHKIMIKTIEQDPTS 318
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,730,781
Number of Sequences: 59808
Number of extensions: 512745
Number of successful extensions: 1611
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1591
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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